Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B14
(929 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53008|CWH41_YEAST Mannosyl-oligosaccharide glucosidase ... 31 5.7
sp|Q650L9|UPPP_BACFR Undecaprenyl-diphosphatase (Undecapren... 30 7.4
>sp|P53008|CWH41_YEAST Mannosyl-oligosaccharide glucosidase (Processing A-glucosidase I)
(Glucosidase I)
Length = 833
Score = 30.8 bits (68), Expect = 5.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +1
Query: 373 QVDLYAEDFPYFMSPNYMPKNPELTSIMRYYYDYSYIQCVYTVSSRKNNPFTIKITALSY 552
Q D + +D Y+ P +M N MRYYY + S+ K ++KI LS
Sbjct: 732 QDDYFGKDENYWRGPIWMNINYLCLDAMRYYYPEVILDVAGEASNAKKLYQSLKIN-LSN 790
Query: 553 YWYSLWIDNQY 585
Y +W + Y
Sbjct: 791 NIYKVWEEQGY 801
>sp|Q650L9|UPPP_BACFR Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
(Bacitracin resistance protein)
Length = 266
Score = 30.4 bits (67), Expect = 7.4
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Frame = -3
Query: 441 FWIFWHIVR*HKVRKVLSIQIDLTIRFIKEFEGSSTICFIFXXXX*GIAIVTISGVDIIF 262
F I H+ +L +ID R + +FE +S ++ I+++ I V + F
Sbjct: 44 FTIVVHVATVFSTLVILWKEIDWIFRGLFKFEMNSETRYVINIL---ISMLPIGIVGVFF 100
Query: 261 EQELIVIF-KHLYFDKC--IITSRYQVQSYSAEPTDVHGNWLKDYESIGLQKKC 109
+ E+ IF L C ++T+ SY A+P +KD IGL + C
Sbjct: 101 KDEVEAIFGSGLLIVGCMLLLTAALLSFSYYAKPRQKENISMKDAFIIGLAQAC 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,204,097
Number of Sequences: 369166
Number of extensions: 2180395
Number of successful extensions: 4910
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4910
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)