Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B06
(911 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin) 501 e-141
sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding pr... 500 e-141
sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding ... 499 e-141
sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin) 499 e-141
sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a ... 461 e-129
sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin) 253 4e-67
sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin) 252 1e-66
sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein) 248 2e-65
sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding ... 248 2e-65
sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b ... 236 9e-62
>sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin)
Length = 456
Score = 501 bits (1289), Expect = e-141
Identities = 248/302 (82%), Positives = 275/302 (91%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AREA GVI E+IK+KK+AGRAVLLAGPPGTGKTALALAIAQELG+KVPFCPMVGSEVYS+
Sbjct: 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGNKVPFCPMVGSEVYST 104
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
EIKKTEVLMENFRRAIGLRI+E KEVYEGEVTE+TP + +NP YGKTISHV+I LKTA
Sbjct: 105 EIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA 164
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADEYVPLP 540
KGTK LK+DP IYE+LQKE+VEVGDVIYIE +SGAVKRQGRSD YA E+DLEA+EYVPLP
Sbjct: 165 KGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRSDTYATEFDLEAEEYVPLP 224
Query: 541 KGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKIVN 720
KGD H+KKEV+QDVTLHDLDVANA PQGGQDI SMMGQLMK KKTEITDKLR I+K+VN
Sbjct: 225 KGDVHQKKEVIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGQINKVVN 284
Query: 721 KYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGADEL 900
KYIDQG AELVPGVLFIDEVHMLD+ECFTYL RALE S+APIVIFATNRG C ++G +++
Sbjct: 285 KYIDQGIAELVPGVLFIDEVHMLDIECFTYLHRALESSLAPIVIFATNRGNCIIRGTEDV 344
Query: 901 KS 906
S
Sbjct: 345 AS 346
>sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
sp|P60122|RUVB1_MOUSE RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
Length = 456
Score = 500 bits (1287), Expect = e-141
Identities = 246/302 (81%), Positives = 274/302 (90%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AREA GVI E+IK+KK+AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS+
Sbjct: 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
EIKKTEVLMENFRRAIGLRIKE KEVYEGEVTE+TP + +NP YGKTISHV+I LKTA
Sbjct: 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA 164
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADEYVPLP 540
KGTK LK+DP I+E+LQKE+VE GDVIYIE +SGAVKRQGR D YA E+DLEA+EYVPLP
Sbjct: 165 KGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLP 224
Query: 541 KGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKIVN 720
KGD HKKKE++QDVTLHDLDVANA PQGGQDI SMMGQLMK KKTEITDKLR +I+K+VN
Sbjct: 225 KGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVN 284
Query: 721 KYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGADEL 900
KYIDQG AELVPGVLF+DEVHMLD+ECFTYL RALE SIAPIVIFA+NRG C ++G +++
Sbjct: 285 KYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDI 344
Query: 901 KS 906
S
Sbjct: 345 TS 346
>sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(Nuclear matrix protein 238) (NMP 238) (54 kDa
erythrocyte cytosolic protein) (ECP-54)
(TIP60-associated protein 54-alpha) (TAP54-alpha)
Length = 456
Score = 499 bits (1286), Expect = e-141
Identities = 246/302 (81%), Positives = 274/302 (90%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AREA GVI E+IK+KK+AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS+
Sbjct: 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
EIKKTEVLMENFRRAIGLRIKE KEVYEGEVTE+TP + +NP YGKTISHV+I LKTA
Sbjct: 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA 164
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADEYVPLP 540
KGTK LK+DP I+E+LQKE+VE GDVIYIE +SGAVKRQGR D YA E+DLEA+EYVPLP
Sbjct: 165 KGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLP 224
Query: 541 KGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKIVN 720
KGD HKKKE++QDVTLHDLDVANA PQGGQDI SMMGQLMK KKTEITDKLR +I+K+VN
Sbjct: 225 KGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVN 284
Query: 721 KYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGADEL 900
KYIDQG AELVPGVLF+DEVHMLD+ECFTYL RALE SIAPIVIFA+NRG C ++G +++
Sbjct: 285 KYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDI 344
Query: 901 KS 906
S
Sbjct: 345 TS 346
>sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin)
Length = 456
Score = 499 bits (1284), Expect = e-141
Identities = 243/302 (80%), Positives = 276/302 (91%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AREA G+ITE+I++KK+AGRA+LLAGPPGTGKTALALA+AQELG+KVPFCPMVGSEVYSS
Sbjct: 45 AREACGIITELIRSKKMAGRAILLAGPPGTGKTALALAMAQELGNKVPFCPMVGSEVYSS 104
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
EIKKTEVLMENFRRAIGLRIKE KEVYEGEVTE+TP + +NP YGKTISHV+I LKTA
Sbjct: 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTA 164
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADEYVPLP 540
KGTK LK+DP IYE+LQKE+VEVGDVIYIE +SGAVKRQGR D +A E+DLEA+EYVPLP
Sbjct: 165 KGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRCDTFATEFDLEAEEYVPLP 224
Query: 541 KGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKIVN 720
KGD H+KKE++QDVTLHDLDVANA PQGGQDI SMMGQLMK KKTEITDKLR +I+K+VN
Sbjct: 225 KGDVHEKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVN 284
Query: 721 KYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGADEL 900
KYIDQG AELVPGVLFIDEVHMLD+ECFTYL RALE SIAPIV+FA+NRG C ++G +++
Sbjct: 285 KYIDQGVAELVPGVLFIDEVHMLDIECFTYLHRALESSIAPIVVFASNRGNCLIRGTEDI 344
Query: 901 KS 906
S
Sbjct: 345 SS 346
>sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a homolog) (TIP49-homology
protein 1)
Length = 463
Score = 461 bits (1186), Expect = e-129
Identities = 221/302 (73%), Positives = 270/302 (89%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AREA GVI ++IKAKK++GRA+LLAG P TGKTALALAI+QELG KVPFCP+VGSE+YS
Sbjct: 54 AREACGVIVDLIKAKKMSGRAILLAGGPSTGKTALALAISQELGPKVPFCPLVGSELYSV 113
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+KKTE LMENFRRAIGLRIKE KEVYEGEVTE+TP A+NP YGKTISHV++ LK+A
Sbjct: 114 EVKKTETLMENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGGYGKTISHVIVGLKSA 173
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADEYVPLP 540
KGTK+L++DP IYE++Q+EKV +GDVIYIE ++GAVKR GRSDAYA E+DLE +EYVPLP
Sbjct: 174 KGTKTLRLDPTIYESIQREKVSIGDVIYIEANTGAVKRVGRSDAYATEFDLETEEYVPLP 233
Query: 541 KGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKIVN 720
KG+ HKKKE+VQDVTLHDLDVANA PQGGQD+ SMMGQL+K KKTEIT+KLR++++K+V
Sbjct: 234 KGEVHKKKEIVQDVTLHDLDVANARPQGGQDVISMMGQLLKPKKTEITEKLRQEVNKVVA 293
Query: 721 KYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGADEL 900
KYIDQG AEL+PGVLFIDEV+MLD+E FTYL++ALE +IAP+V+ A+NRG+ TV+G +++
Sbjct: 294 KYIDQGVAELIPGVLFIDEVNMLDIEIFTYLNKALESNIAPVVVLASNRGMTTVRGTEDV 353
Query: 901 KS 906
S
Sbjct: 354 IS 355
>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin)
Length = 462
Score = 253 bits (647), Expect = 4e-67
Identities = 138/300 (46%), Positives = 196/300 (65%), Gaps = 2/300 (0%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
+R AAGVI EMIK K+AGRAVL+AG PGTGKTA+A+ +AQ LGS PF + GSE++S
Sbjct: 51 SRRAAGVILEMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAQALGSDTPFTAIAGSEIFSL 110
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+ KTE L + FRR+IG+RIKE E+ EGEV E VQ D P++ G + + LKT
Sbjct: 111 EMSKTEALTQAFRRSIGVRIKEETEIIEGEVVE---VQIDRPATGTGAKVG--KLTLKTT 165
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADE--YVP 534
+ + + E+L KEKV+ GDVI I+ ++G + + GR+ A +YD + +V
Sbjct: 166 EMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGSQTKFVQ 225
Query: 535 LPKGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKI 714
P G+ K+KEVV V+LH++DV N+ QG L EI ++R I+
Sbjct: 226 CPDGELQKRKEVVHTVSLHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAK 278
Query: 715 VNKYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGAD 894
V ++ ++G AE++PGVLFIDEVHMLD+ECF++L+RALE +AP++I ATNRG+ ++G +
Sbjct: 279 VAEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITRIRGTN 338
>sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin)
Length = 463
Score = 252 bits (643), Expect = 1e-66
Identities = 135/300 (45%), Positives = 197/300 (65%), Gaps = 2/300 (0%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
+R AAG+I EMIK ++AGRAVL+AG PGTGKTA+A+ IAQ LG PF + GSE++S
Sbjct: 52 SRRAAGLILEMIKDGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAGSEIFSL 111
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+ KTE L + FR+AIG+RIKE E+ EGEV EI Q D P++ G + + LKT
Sbjct: 112 EMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEI---QIDRPATGTGAKVG--KLTLKTT 166
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDL--EADEYVP 534
+ + + E+L KE+V+ GDVI I+ ++G + + GRS A +YD ++V
Sbjct: 167 EMETIYDLGTKMIESLSKERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGAQTQFVQ 226
Query: 535 LPKGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKI 714
P+G+ K+KEVV V+LH++DV N+ QG L EI ++R I+
Sbjct: 227 CPEGELQKRKEVVHTVSLHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAK 279
Query: 715 VNKYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGAD 894
V+++ ++G AE++PGVLFIDEVHMLD+ECF++L+RALE ++P++I ATNRG+ ++G +
Sbjct: 280 VSEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGITRIRGTN 339
>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein)
Length = 463
Score = 248 bits (632), Expect = 2e-65
Identities = 135/298 (45%), Positives = 193/298 (64%), Gaps = 2/298 (0%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AR AAGV+ EMI+ K+AGRAVL+AG PGTGKTA+A+ +AQ LG PF + GSE++S
Sbjct: 52 ARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+ KTE L + FRR+IG+RIKE E+ EGEV EI Q D P++ G + + LKT
Sbjct: 112 EMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVG--KLTLKTT 166
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADE--YVP 534
+ + + E+L K+KV+ GDVI I+ ++G + + GRS A +YD + +V
Sbjct: 167 EMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQ 226
Query: 535 LPKGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKI 714
P G+ K+KEVV V+LH++DV N+ QG L EI ++R I+
Sbjct: 227 CPDGELQKRKEVVHTVSLHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAK 279
Query: 715 VNKYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKG 888
V ++ ++G AE++PGVLFIDEVHMLD+E F++L+RALE +AP++I ATNRG+ ++G
Sbjct: 280 VAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRG 337
>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding protein-interacting protein)
(48-kDa TBP-interacting protein) (TIP49b) (Repressing
pontin 52) (Reptin 52) (51 kDa erythrocyte cytosolic
protein) (ECP-51) (TIP60-associated protein 54-beta)
(TAP54-beta)
Length = 463
Score = 248 bits (632), Expect = 2e-65
Identities = 135/298 (45%), Positives = 193/298 (64%), Gaps = 2/298 (0%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AR AAGV+ EMI+ K+AGRAVL+AG PGTGKTA+A+ +AQ LG PF + GSE++S
Sbjct: 52 ARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+ KTE L + FRR+IG+RIKE E+ EGEV EI Q D P++ G + + LKT
Sbjct: 112 EMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVG--KLTLKTT 166
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYDLEADE--YVP 534
+ + + E+L K+KV+ GDVI I+ ++G + + GRS A +YD + +V
Sbjct: 167 EMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQ 226
Query: 535 LPKGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKI 714
P G+ K+KEVV V+LH++DV N+ QG L EI ++R I+
Sbjct: 227 CPDGELQKRKEVVHTVSLHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAK 279
Query: 715 VNKYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKG 888
V ++ ++G AE++PGVLFIDEVHMLD+E F++L+RALE +AP++I ATNRG+ ++G
Sbjct: 280 VAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRG 337
>sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b homolog) (TIP49-homology
protein 2)
Length = 471
Score = 236 bits (601), Expect = 9e-62
Identities = 134/300 (44%), Positives = 191/300 (63%), Gaps = 2/300 (0%)
Frame = +1
Query: 1 AREAAGVITEMIKAKKLAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSS 180
AR AAGVI +M++ +AGRAVL+AGPP TGKTALA+ ++Q LG VPF + GSE++S
Sbjct: 50 ARRAAGVILKMVQNGTIAGRAVLVAGPPSTGKTALAMGVSQSLGKDVPFTAIAGSEIFSL 109
Query: 181 EIKKTEVLMENFRRAIGLRIKEVKEVYEGEVTEITPVQADNPSSSYGKTISHVMICLKTA 360
E+ KTE L + FR++IG++IKE E+ EGEV EI ++ GK + +KT
Sbjct: 110 ELSKTEALTQAFRKSIGIKIKEETELIEGEVVEIQIDRSITGGHKQGK------LTIKTT 163
Query: 361 KGTKSLKMDPLIYENLQKEKVEVGDVIYIEVSSGAVKRQGRSDAYANEYD-LEAD-EYVP 534
++ + + L KEKV GDVI I+ +SG + + GRS A + +YD + AD +V
Sbjct: 164 DMETIYELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGADTRFVQ 223
Query: 535 LPKGDAHKKKEVVQDVTLHDLDVANAYPQGGQDIASMMGQLMKQKKTEITDKLRRDIDKI 714
P+G+ K+K VV V+LH++DV N+ QG L EI ++R I+
Sbjct: 224 CPEGELQKRKTVVHTVSLHEIDVINSRTQG-------FLALFTGDTGEIRSEVRDQINTK 276
Query: 715 VNKYIDQGTAELVPGVLFIDEVHMLDLECFTYLSRALEYSIAPIVIFATNRGVCTVKGAD 894
V ++ ++G AE+VPGVLFIDEVHMLD+ECF++++RALE APIV+ ATNRGV +G +
Sbjct: 277 VAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTN 336
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.133 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,362,656
Number of Sequences: 369166
Number of extensions: 1709092
Number of successful extensions: 7507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7476
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)