Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_A18
(346 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19959|NXS2_AIPLA Short neurotoxin B precursor 37 0.018
sp|P68412|NXS1_ASTST Short neurotoxin 1 (Toxin A) >gi|55977... 36 0.024
sp|P01474|CX2_NAJME Cytotoxin 2 (Cytotoxin V-II-2/V-II-3) 35 0.041
sp|P32879|NXS1_AIPLA Short neurotoxin A 35 0.070
sp|P19958|NXS3_AIPLA Short neurotoxin C 35 0.070
sp|Q00996|CD59_SHV21 Surface glycoprotein CD59 homolog prec... 35 0.070
sp|P62388|NXSA_PELPL Pelamitoxin a >gi|55977291|sp|P62376|N... 35 0.070
sp|P25494|NXS1_HYDCY Short neurotoxin 1 (Hydrophitoxin A) 34 0.091
sp|P19960|NXS4_AIPLA Short neurotoxin D precursor 34 0.12
sp|P01473|CX3_NAJME Cytotoxin 3 (Component 3.20) 33 0.16
>sp|P19959|NXS2_AIPLA Short neurotoxin B precursor
Length = 81
Score = 36.6 bits (83), Expect = 0.018
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 LLLFSIIITNFNLYFAQ-LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTL 182
LLL +++T L LTC N + TT N+C T ++ + RGCG
Sbjct: 4 LLLTLVVVTIVCLDLGYTLTCCNQQSSQPKTTTDCADNSCYKMTWRDHRGTRIERGCGCP 63
Query: 183 CVVGTVNNVTYQCCNSNQCNS 245
V + +CC +N+CN+
Sbjct: 64 QV---KPGIKLECCKTNECNN 81
>sp|P68412|NXS1_ASTST Short neurotoxin 1 (Toxin A)
sp|P68414|NXSA_ACAPE Short neurotoxin 1 (Major/minor neurotoxin)
sp|P68413|NXS1_HYDOR Short neurotoxin 1 (Toxin A)
Length = 60
Score = 36.2 bits (82), Expect = 0.024
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 57 LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQ 236
+TC N + TT+ N+C T +++ + RGCG V + + +CC++N+
Sbjct: 1 MTCCNQQSSQPKTTTNCAGNSCYKKTWSDHRGTIIERGCGCPQV---KSGIKLECCHTNE 57
Query: 237 CNS 245
CN+
Sbjct: 58 CNN 60
>sp|P01474|CX2_NAJME Cytotoxin 2 (Cytotoxin V-II-2/V-II-3)
Length = 61
Score = 35.4 bits (80), Expect = 0.041
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 72 CITCPIPFTTSLTINNCNFC---TVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQCN 242
C +PF N C T+ T NRGC C ++ V Y CCN+N+CN
Sbjct: 3 CHNTLLPFIYKTCPEGQNLCFKGTLKFPKKTTYNRGCAATCPKSSLL-VKYVCCNTNKCN 61
>sp|P32879|NXS1_AIPLA Short neurotoxin A
Length = 60
Score = 34.7 bits (78), Expect = 0.070
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 57 LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQ 236
LTC N + TT N+C T ++ + RGCG V + +CC +N+
Sbjct: 1 LTCCNQQSSQPKTTTDCADNSCYKKTWQDHRGTRIERGCGCPQV---KPGIKLECCKTNE 57
Query: 237 CNS 245
CN+
Sbjct: 58 CNN 60
>sp|P19958|NXS3_AIPLA Short neurotoxin C
Length = 60
Score = 34.7 bits (78), Expect = 0.070
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 57 LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQ 236
LTC N + TT N+C T ++ + RGCG V + +CC +N+
Sbjct: 1 LTCCNQQSSQPKTTTDCADNSCYKKTWKDHRGTRIERGCGCPQV---KPGIKLECCKTNE 57
Query: 237 CNS 245
CN+
Sbjct: 58 CNN 60
>sp|Q00996|CD59_SHV21 Surface glycoprotein CD59 homolog precursor
Length = 121
Score = 34.7 bits (78), Expect = 0.070
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Frame = +3
Query: 9 LLFSIIITN-FNLYFAQLTCFNCITCPIPFTTSLTI-NNCNFCTVTNYNNGTVNRGCGTL 182
+LF++++T F L C+NC + TTS + +N + C + +G R C
Sbjct: 3 ILFTLVLTFVFCKPIHSLQCYNCSHSTMQCTTSTSCTSNLDSCLIAKAGSGVYYR-CWKF 61
Query: 183 --CVVGTVNN------VTYQCCNSNQCNSG------KRSVINFVQFFISIFIST 302
C ++N + Y CC N CN KR++ + +++F+ T
Sbjct: 62 DDCSFKRISNQLSETQLKYHCCKKNLCNVNKGIENIKRTISDKALLLLALFLVT 115
>sp|P62388|NXSA_PELPL Pelamitoxin a
sp|P62376|NXS2_HYDCY Short neurotoxin 2 (Hydrophitoxin b)
Length = 60
Score = 34.7 bits (78), Expect = 0.070
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 57 LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQ 236
+TC N + TT+ ++C T +++ + RGCG V + + +CC++N+
Sbjct: 1 MTCCNQQSSQPKTTTNCAESSCYKKTWSDHRGTRIERGCGCPQV---KSGIKLECCHTNE 57
Query: 237 CNS 245
CN+
Sbjct: 58 CNN 60
>sp|P25494|NXS1_HYDCY Short neurotoxin 1 (Hydrophitoxin A)
Length = 60
Score = 34.3 bits (77), Expect = 0.091
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 57 LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQ 236
+TC N + TT+ ++C T +++ + RGCG V + +CC++N+
Sbjct: 1 MTCCNQQSSQPKTTTNCAESSCYKKTWSDHRGTRIERGCGCPQV---KKGIKLECCHTNE 57
Query: 237 CNS 245
CN+
Sbjct: 58 CNN 60
>sp|P19960|NXS4_AIPLA Short neurotoxin D precursor
Length = 81
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 6 LLLFSIIITNFNLYFAQ-LTCFNCITCPIPFTTSLTINNCNFCTVTNYNNGTVNRGCGTL 182
LLL +++T L LTC N + TT ++C T ++ + RGCG
Sbjct: 4 LLLTLVVVTIVCLDLGYTLTCCNQQSSQPKTTTDCADDSCYKKTWKDHRGTRIERGCGCP 63
Query: 183 CVVGTVNNVTYQCCNSNQCNS 245
V + +CC +N+CN+
Sbjct: 64 QV---KPGIKLECCKTNECNN 81
>sp|P01473|CX3_NAJME Cytotoxin 3 (Component 3.20)
Length = 61
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 72 CITCPIPFTTSLTINNCNFC---TVTNYNNGTVNRGCGTLCVVGTVNNVTYQCCNSNQCN 242
C P+PF N C T+ T RGC C T V Y CCN+++CN
Sbjct: 3 CHNTPLPFIYKTCPEGNNLCFKGTLKFPKKITYKRGCADACPK-TSALVKYVCCNTDKCN 61
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,116,075
Number of Sequences: 369166
Number of extensions: 454793
Number of successful extensions: 1716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)