Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_P17
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 32 2.4
sp|P33768|DNAA_BORBU Chromosomal replication initiator prot... 31 4.2
sp|P56117|Y190_HELPY Hypothetical protein HP0190 31 5.4
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
Length = 1956
Score = 32.0 bits (71), Expect = 2.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 747 SFYLTKPNDEEYYNKFVSLFYSALPLIENDKKCTDNPIKNESYIKEKSSSLN 902
SFY+ K +D YNK + Y+ + + C N I N++YI K++ N
Sbjct: 1502 SFYIIKNDDNNVYNK--NYIYNKNYIYNKNSICNKNYICNKNYIYNKNNIYN 1551
>sp|P33768|DNAA_BORBU Chromosomal replication initiator protein dnaA
Length = 486
Score = 31.2 bits (69), Expect = 4.2
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +3
Query: 657 NLKLIHLNIFSKTQEKGKLHSKPVLFSEKKSFYLTKPNDEEYYNKFVSLFYSALPLIEND 836
N+K+ N+F K Q + + F++K L K YN V +F + P ++
Sbjct: 40 NIKISTPNLFHKNQIEKR-------FTKKIKEILIKNG----YNNIVIVFTNQPPKTHSN 88
Query: 837 KKCTDNPIKNESY-----IKEKSSS 896
K+ T NP NE++ +KEK++S
Sbjct: 89 KQETKNPALNETFSKFDKLKEKTTS 113
>sp|P56117|Y190_HELPY Hypothetical protein HP0190
Length = 502
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 624 QFWNPNSFIQLNLKLIHLNIFSKTQEKGKLHSKPVLFSEKKSFYLTKPND--EEYYNKFV 797
++W + I ++L H + + +E KLH K + +E K+ + K ND + +
Sbjct: 219 RYWRFHRSIPVSLLRTHKRLKNNAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQY 278
Query: 798 SLFYSALPLIENDKKCTDNPI 860
++Y + + K D P+
Sbjct: 279 PIYYGNAIFLADSPKKIDTPL 299
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,082,533
Number of Sequences: 369166
Number of extensions: 1951919
Number of successful extensions: 3954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3954
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)