Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_P11
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 206 4e-53
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 201 1e-51
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 201 2e-51
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 200 3e-51
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 193 4e-49
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 190 4e-48
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 189 6e-48
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 189 7e-48
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 186 5e-47
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 186 6e-47
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 206 bits (525), Expect = 4e-53
Identities = 102/223 (45%), Positives = 137/223 (61%)
Frame = +2
Query: 8 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 187
+ L ++A+ V V ++ W +K + ++Y+ D RR IWE+N+K+IQ+HNL
Sbjct: 1 MRLFILAVLTV----GVLGSNDDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNL 56
Query: 188 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 367
+DLG TY+LGLNQF DMT EEFKAKYL M + N +P +DWR+
Sbjct: 57 RHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRE 116
Query: 368 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 547
GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS L
Sbjct: 117 SGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGL 176
Query: 548 MDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFY 676
M+NA++Y+K G+E+E YPYTA +G C+ N V K TG+Y
Sbjct: 177 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYY 219
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 201 bits (512), Expect = 1e-51
Identities = 103/225 (45%), Positives = 138/225 (61%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
L+L+ + I + KF N L+ +W +K T R Y + RR +WE+N+K I+ H
Sbjct: 5 LVLAAFCLGIASAVPKFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP SVDW
Sbjct: 63 NGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
M AF+Y+K+ G++SE YPY A D CK P V TGF
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGF 225
Score = 53.5 bits (127), Expect = 6e-07
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GFT + E L AVATVGP+SVA+DAGH+SFQ YKS
Sbjct: 221 NDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 262
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 201 bits (511), Expect = 2e-51
Identities = 106/225 (47%), Positives = 136/225 (60%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
LIL+ + I + F + L +W +K R Y + RR +WE+N+K I+ H
Sbjct: 5 LILAAFCLGIASATLTF--DHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVDW
Sbjct: 63 NQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
LMD AF+Y++D G++SE YPY AT+ +CK NP V TGF
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGF 225
Score = 50.1 bits (118), Expect = 7e-06
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYK 782
N GF DI Q E L AVATVGP+SVAIDAGH SF YK
Sbjct: 221 NDTGFVDIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYK 260
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 200 bits (509), Expect = 3e-51
Identities = 106/226 (46%), Positives = 134/226 (59%), Gaps = 2/226 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
L L+ + + I + KF + LN +W +K T R Y + RR +WE+N+K I+ H
Sbjct: 5 LFLTALCLGIASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVDW
Sbjct: 63 NREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 673
LMDNAFRY+KD G++SE YPY D TC P TGF
Sbjct: 181 GLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGF 226
Score = 52.4 bits (124), Expect = 1e-06
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GF D+ Q E L AVAT+GP+SVAIDAGH SFQ YKS
Sbjct: 222 NDTGFVDLP-QREKALMKAVATLGPISVAIDAGHQSFQFYKS 262
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 193 bits (491), Expect = 4e-49
Identities = 104/224 (46%), Positives = 131/224 (58%), Gaps = 2/224 (0%)
Frame = +2
Query: 8 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 187
L+++ + + + K N L+ W +K T R Y + RR +WE+N K I HN
Sbjct: 7 LTVLCLGVASAAPKLDPN--LDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQ 64
Query: 188 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 367
EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVDW +
Sbjct: 65 EYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVDWTK 122
Query: 368 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 547
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGL 182
Query: 548 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 673
MDNAF+YIKD G++SE YPY ATD +C P TGF
Sbjct: 183 MDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGF 226
Score = 54.7 bits (130), Expect = 3e-07
Identities = 29/42 (69%), Positives = 30/42 (71%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GF DI Q E L AVATVGP+SVAIDAGH SFQ YKS
Sbjct: 222 NDTGFVDIP-QREKALMKAVATVGPISVAIDAGHTSFQFYKS 262
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 190 bits (482), Expect = 4e-48
Identities = 102/226 (45%), Positives = 133/226 (58%), Gaps = 2/226 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
L L+ + + I + K N L+ +W +K T GR Y + RR +WE+N+K I+ H
Sbjct: 5 LFLTALCLGIASAAPKLDQN--LDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVDW
Sbjct: 63 NQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 REKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGF 673
LMDNAF+Y+KD G+++E YPY + +C P TGF
Sbjct: 181 GLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGF 226
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GF DI Q E L AVATVGP+SVAIDAGH+SFQ YKS
Sbjct: 222 NDTGFVDIP-QREKALMKAVATVGPISVAIDAGHSSFQFYKS 262
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 189 bits (481), Expect = 6e-48
Identities = 103/225 (45%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
L+L+++ + KF + + EW +K+T R Y + RR IWE+N++ IQ H
Sbjct: 5 LLLAVLCLGTALATPKF--DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY G+H +S+ +N F DMTNEEF+ G K +G + P + + P SVDW
Sbjct: 63 NGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQEPLMLKI-PKSVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
LMD AF+YIK+ G++SE YPY A DG+CK V TGF
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGF 225
Score = 46.6 bits (109), Expect = 8e-05
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GF DI Q E L AVATVGP+SVA+DA H S Q Y S
Sbjct: 221 NDTGFVDIPQQ-EKALMKAVATVGPISVAMDASHPSLQFYSS 261
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 189 bits (480), Expect = 7e-48
Identities = 101/225 (44%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 181
L+L+++ + KF + N +W +K+T R Y + RR +WE+N++ IQ H
Sbjct: 5 LLLAVLCLGTALATPKF--DQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLH 62
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 361
N EY GKH +++ +N F DMTNEEF+ G K +G + P + + P +VDW
Sbjct: 63 NGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQEPLMLQI-PKTVDW 120
Query: 362 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 541
R+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNG 180
Query: 542 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
LMD AF+YIK+ G++SE YPY A DG+CK V TGF
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGF 225
Score = 46.6 bits (109), Expect = 8e-05
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3
Query: 660 NALGFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLYKS 785
N GF DI Q E L AVATVGP+SVA+DA H S Q Y S
Sbjct: 221 NDTGFVDIPQQ-EKALMKAVATVGPISVAMDASHPSLQFYSS 261
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 186 bits (473), Expect = 5e-47
Identities = 101/227 (44%), Positives = 139/227 (61%), Gaps = 4/227 (1%)
Frame = +2
Query: 5 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKH 181
+L L VV+ P++ L+ +WE +K T+ ++Y+ D I+RRLIWE+NLK+I H
Sbjct: 6 VLLLPVVSFALHPEEI-----LDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIH 60
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGS--TYMAPENIGVLPASV 355
NLE LG HTY L +N DMT+EE K G+ K P+ S T P+ G P S+
Sbjct: 61 NLEASLGVHTYELAMNHLGDMTSEEVVQKMTGL-KVPPSRSHSNDTLYIPDWEGRTPDSI 119
Query: 356 DWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXX 535
D+R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 120 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENYGC 177
Query: 536 XXXLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
M NAF+Y+ +++GI+SE YPY D +C NP+ KC G+
Sbjct: 178 GGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGY 224
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +3
Query: 669 GFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLY 779
G+ +I NE L AVA VGPVSVAIDA SFQ Y
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 186 bits (472), Expect = 6e-47
Identities = 101/226 (44%), Positives = 135/226 (59%), Gaps = 3/226 (1%)
Frame = +2
Query: 5 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKH 181
+L L VV+ P++ L+ WE +K T ++Y+ D I+RRLIWE+NLKYI H
Sbjct: 6 VLLLPVVSFALYPEEI-----LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIH 60
Query: 182 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGI-MKTKPTLEGSTYMAPENIGVLPASVD 358
NLE LG HTY L +N DMT+EE K G+ + + T PE G P SVD
Sbjct: 61 NLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVD 120
Query: 359 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 538
+R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 121 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCG 178
Query: 539 XXLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGF 673
M NAF+Y+ K++GI+SE YPY + +C NP+ KC G+
Sbjct: 179 GGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 224
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +3
Query: 669 GFTDIQSQNETDLANAVATVGPVSVAIDAGHASFQLY 779
G+ +I NE L AVA VGPVSVAIDA SFQ Y
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,565,284
Number of Sequences: 369166
Number of extensions: 1621152
Number of successful extensions: 4692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4432
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)