Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N17-1
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81WE9|PYRB_BACAN Aspartate carbamoyltransferase (Aspart... 30 1.7
sp|Q9UUG9|TSC2_SCHPO Tuberous sclerosis 2 protein homolog 30 1.7
sp|Q732I0|PYRB_BACC1 Aspartate carbamoyltransferase (Aspart... 30 1.7
sp|Q819S0|PYRB_BACCR Aspartate carbamoyltransferase (Aspart... 30 1.7
sp|Q04461|YM01_YEAST Hypothetical 52.4 kDa protein in ILV2-... 29 3.8
sp|Q46124|RPOB_CAMJE DNA-directed RNA polymerase beta chain... 29 3.8
sp|P08479|IPSG_VULVU Double-headed protease inhibitor, subm... 28 5.0
sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog 28 5.0
sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At... 28 5.0
sp|P16226|IPSG_MELME Double-headed protease inhibitor, subm... 28 6.5
>sp|Q81WE9|PYRB_BACAN Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
sp|Q636D7|PYRB_BACCZ Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
sp|Q6HES5|PYRB_BACHK Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 304
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 222 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 61
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 118 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 172
>sp|Q9UUG9|TSC2_SCHPO Tuberous sclerosis 2 protein homolog
Length = 1339
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -1
Query: 255 QDYAAAFKSIELNCG-ADVNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNNA 79
+D A FK +E C AD N P C + V E+FSKE D D Y +
Sbjct: 475 EDRALLFKLVEDACSVADENSAPILCSKFLFPVIESFSKESD--DCVVSPVYNMLFFLSV 532
Query: 78 NARKKLLADC 49
N + L DC
Sbjct: 533 NFQNPGLKDC 542
>sp|Q732I0|PYRB_BACC1 Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 304
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 222 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 61
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 118 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 172
>sp|Q819S0|PYRB_BACCR Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 301
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 222 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 61
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 115 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 169
>sp|Q04461|YM01_YEAST Hypothetical 52.4 kDa protein in ILV2-ADE17 intergenic region
Length = 462
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 183 CYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNNANARKKLLADCAAAR 37
C L M + E FSK++DKL+ +Y TLK R+ L + AR
Sbjct: 396 CRLSMSQLYEYFSKKMDKLE-----DYSLTLKRRGKPRRIFLLEEREAR 439
>sp|Q46124|RPOB_CAMJE DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1378
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -1
Query: 261 INQDYAAAFKSIELNCGADVNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNN 82
+N D K+ + AD++++ K + T+ +A+SKEI K EY +
Sbjct: 995 LNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIKAYSKEIQK-------EYDDLKNHF 1047
Query: 81 ANARKKLLAD 52
N +KKL A+
Sbjct: 1048 QNEKKKLKAE 1057
>sp|P08479|IPSG_VULVU Double-headed protease inhibitor, submandibular gland
Length = 115
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 216 CGADVNKMPKDCYLEMITVNEAFSKEIDKL-DSTCDAE 106
CG D N +C +T+N+ F E+ KL D+ CD E
Sbjct: 32 CGTDHNTYSNECMFCALTLNKEF--EVRKLQDTACDIE 67
>sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog
Length = 703
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 204 VNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNNA 79
+N + K YL++ T+N ++ D DST +Y K L+ +
Sbjct: 609 LNYINKSEYLDIATINYVLEQDDDFFDSTKKTDYTKKLRKES 650
>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480
Length = 854
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 261 INQDYAAAFKSIELNCGADVNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAEYFKTL 91
IN D+ ++I + GA V +P D E++ S +I+K+ + TL
Sbjct: 484 INSDFGKQQETICVKSGAHVRMIPNDINWEIVRQVSLISTQIEKISCSSKCSNLSTL 540
>sp|P16226|IPSG_MELME Double-headed protease inhibitor, submandibular gland
Length = 122
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 243 AAFKSIELNCGADVNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAE 106
A + ++ CG D +C M+T N+ FS I + D+ CD E
Sbjct: 27 ACSRHLDPVCGTDHRTYSNECMFCMLTQNKRFSVRILQ-DNNCDIE 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,820,161
Number of Sequences: 369166
Number of extensions: 464803
Number of successful extensions: 1215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)