Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N09
(412 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 254 6e-68
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 254 6e-68
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 253 8e-68
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 253 1e-67
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 253 1e-67
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 253 1e-67
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 253 1e-67
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 253 1e-67
sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 253 1e-67
sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6) 253 1e-67
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 254 bits (648), Expect = 6e-68
Identities = 124/137 (90%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 254 bits (648), Expect = 6e-68
Identities = 124/137 (90%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 253 bits (647), Expect = 8e-68
Identities = 123/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFSSLLMERLS 158
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
Length = 451
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
>sp|Q6AYZ1|TBA6_RAT Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 253 bits (646), Expect = 1e-67
Identities = 122/137 (89%), Positives = 125/137 (91%)
Frame = +2
Query: 2 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 181
ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTG
Sbjct: 22 ELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81
Query: 182 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 361
TYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 82 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF 141
Query: 362 XXXXXXXXXXLLMERLS 412
LLMERLS
Sbjct: 142 GGGTGSGFTSLLMERLS 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,816,375
Number of Sequences: 369166
Number of extensions: 807330
Number of successful extensions: 2460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2345
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)