Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M20
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 36 0.076
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 34 0.29
sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich ven... 31 1.9
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 31 2.5
sp|P30321|DPOL_PBCV1 DNA polymerase 30 3.2
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 30 5.5
sp|P35795|SC14_SCHCO Fruiting body protein SC14 precursor 30 5.5
sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor 29 7.1
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 29 9.3
sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor 29 9.3
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 35.8 bits (81), Expect = 0.076
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 253 PYEVGAACSKCPKGTSCKNNLC 318
PY+ GA CS CPK C N+LC
Sbjct: 174 PYKQGATCSDCPKDDKCLNSLC 195
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 33.9 bits (76), Expect = 0.29
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 253 PYEVGAACSKCPKGTSCKNNLC 318
PY+ GA CS CP C +NLC
Sbjct: 185 PYKRGATCSACPNNDKCLDNLC 206
Score = 31.6 bits (70), Expect = 1.4
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 2 YAVGCAAVNCKEKTG-GSFAYGWLFICNYGP 91
Y VGCA C + +G + + G FICNYGP
Sbjct: 147 YKVGCAVQFCPKVSGFDALSNGAHFICNYGP 177
>sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich venom protein 1) (NA-CRVP1)
(Protein G2a)
Length = 239
Score = 31.2 bits (69), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 229 SGNFNDEA--PYEVGAACSKCPKGTSCKNNLC 318
SGNF + PY++G C CP ++C N LC
Sbjct: 168 SGNFQGKTATPYKLGPPCGDCP--SACDNGLC 197
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 30.8 bits (68), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 2 YAVGCAAVNCKEKTGGSFAYGWLFICNYGPA*DF 103
Y +GCAA C S Y + F+C Y PA +F
Sbjct: 137 YRIGCAAAYCP-----SSPYSYFFVCQYCPAGNF 165
>sp|P30321|DPOL_PBCV1 DNA polymerase
Length = 913
Score = 30.4 bits (67), Expect = 3.2
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 365 RKDTVDITRDTLVITRDMLVIIKDTLAIIKDTLVIIRKXXXXXXXXXXFIENFMIDALL 541
R+D ITRD L + D ++ KDT + +TL IRK +E FM+ LL
Sbjct: 721 RRDFSPITRDILKESLDTILYKKDTPTAVSETLERIRKVLDNEYP----MEKFMMSKLL 775
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 29.6 bits (65), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 229 SGNFNDE--APYEVGAACSKCPKGTSCKNNLC 318
+GN+ ++ PYE G C++CP +C N LC
Sbjct: 174 AGNYVNKINTPYEQGTPCARCP--GNCDNGLC 203
>sp|P35795|SC14_SCHCO Fruiting body protein SC14 precursor
Length = 214
Score = 29.6 bits (65), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +2
Query: 8 VGCAAVNCKE-----KTGGSFAYGWLFICNYGP 91
+GCAA +C + K G + W ++CNY P
Sbjct: 165 LGCAAYSCPQGTLGKKPGDKWKSLWYYVCNYDP 197
>sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor
Length = 967
Score = 29.3 bits (64), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 250 APYEVGAACSKCPKGTSCKNNLC 318
+P CSKCP G++C+N C
Sbjct: 169 SPSNTENPCSKCPLGSACRNGNC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 28.9 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 2 YAVGCAAVNCKEKTGGSFAYGWLFICNYGPA 94
Y VGCAA C S Y + ++C Y PA
Sbjct: 143 YLVGCAAAYCP-----SSLYNYFYVCQYCPA 168
>sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor
Length = 240
Score = 28.9 bits (63), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 2 YAVGCAAVNCKEKTGGSFAYGWLFICNYGPA 94
Y VGCAA C S Y + ++C Y PA
Sbjct: 144 YLVGCAAAYCP-----SSEYSYFYVCQYCPA 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,211,347
Number of Sequences: 369166
Number of extensions: 671613
Number of successful extensions: 1961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)