Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M18
(665 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 361 1e-99
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 358 9e-99
sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha) 356 3e-98
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 355 5e-98
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 355 6e-98
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 355 6e-98
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 355 6e-98
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 355 6e-98
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 355 8e-98
sp|Q9YIC0|EF1A_ORYLA Elongation factor 1-alpha (EF-1-alpha) 352 5e-97
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 361 bits (926), Expect = 1e-99
Identities = 174/193 (90%), Positives = 187/193 (96%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY P AVAFVPI
Sbjct: 181 IGYNPAAVAFVPI 193
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 358 bits (918), Expect = 9e-99
Identities = 173/193 (89%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKKEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY P AVAFVPI
Sbjct: 181 IGYNPAAVAFVPI 193
>sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 356 bits (914), Expect = 3e-98
Identities = 171/193 (88%), Positives = 186/193 (96%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ R+EEIKKEV SY+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY P +VAFVPI
Sbjct: 181 IGYNPASVAFVPI 193
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 355 bits (912), Expect = 5e-98
Identities = 171/193 (88%), Positives = 185/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKKEV SY+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSSYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY P AVAFVPI
Sbjct: 181 IGYNPAAVAFVPI 193
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 355 bits (911), Expect = 6e-98
Identities = 170/193 (88%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY PD VAFVPI
Sbjct: 181 IGYNPDTVAFVPI 193
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 355 bits (911), Expect = 6e-98
Identities = 170/193 (88%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY PD VAFVPI
Sbjct: 181 IGYNPDTVAFVPI 193
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 355 bits (911), Expect = 6e-98
Identities = 170/193 (88%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY PD VAFVPI
Sbjct: 181 IGYNPDTVAFVPI 193
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 355 bits (911), Expect = 6e-98
Identities = 170/193 (88%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY PD VAFVPI
Sbjct: 181 IGYNPDTVAFVPI 193
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 355 bits (910), Expect = 8e-98
Identities = 169/193 (87%), Positives = 184/193 (95%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY PD VAFVPI
Sbjct: 181 IGYNPDTVAFVPI 193
>sp|Q9YIC0|EF1A_ORYLA Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 352 bits (903), Expect = 5e-97
Identities = 170/193 (88%), Positives = 183/193 (94%)
Frame = +2
Query: 8 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 187
M +K HINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 188 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 367
DKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 368 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKE 547
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S RFEEI+KEV +Y+K+
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEIQKEVSTYIKK 180
Query: 548 VGYQPDAVAFVPI 586
+GY P AVAFVPI
Sbjct: 181 IGYNPAAVAFVPI 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,270,126
Number of Sequences: 369166
Number of extensions: 1336326
Number of successful extensions: 6710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5511
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)