Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M15
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform... 45 4e-05
sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform) 45 4e-05
sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform) 45 5e-05
sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform) 45 7e-05
sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform) 45 7e-05
sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform) ... 45 7e-05
sp|P21566|COF2_CHICK Cofilin-2 (Cofilin, muscle isoform) 45 7e-05
sp|P37167|ACTP_ACACA Actophorin 44 9e-05
sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (A... 43 2e-04
sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) ... 43 2e-04
>sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein)
(p18)
Length = 166
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 174
L FI W PE+ + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 99 LVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 174
L FI W PE+ + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 99 LVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 45.1 bits (105), Expect = 5e-05
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 174
L FI W PE + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 99 LVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 189
L FI W PE+ + S+MI A+SK I + G+K + + N D+I D S + EK V
Sbjct: 99 LVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNV 157
>sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 189
L FI W PE+ + S+MI A+SK I + G+K + + N D+I D S + EK V
Sbjct: 99 LVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGSV 157
>sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform)
sp|Q6B7M7|COF1_SHEEP Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 44.7 bits (104), Expect = 7e-05
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 174
L FI W PE + S+MI A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 99 LVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P21566|COF2_CHICK Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 189
L FI W PE+ + S+MI A+SK I + G+K + + N D+I D S + EK V
Sbjct: 99 LVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNV 157
>sp|P37167|ACTP_ACACA Actophorin
Length = 138
Score = 44.3 bits (103), Expect = 9e-05
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEKTASKV 189
+ FI W P++ I S+M+ ++K I ++VG++ +++A EI E + E+ V
Sbjct: 80 ITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKKDV 137
>sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (ADF)
sp|P60981|DEST_HUMAN Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 174
L F W PE + S+MI A+SK I + G+K + +AN ++++ + I EK
Sbjct: 99 LMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
>sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 16 LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 174
L F W PE + S+MI A+SK I + G+K + +AN ++++ + I EK
Sbjct: 99 LMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,526,277
Number of Sequences: 369166
Number of extensions: 337888
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)