Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M07
(536 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7MF00|GLPB_VIBVY Anaerobic glycerol-3-phosphate dehydro... 31 1.7
sp|Q8D7Y4|GLPB_VIBVU Anaerobic glycerol-3-phosphate dehydro... 31 1.7
sp|P33561|RHO_BORBU Transcription termination factor rho 30 2.9
sp|P32786|RRN6_YEAST RNA polymerase I-specific transcriptio... 29 6.4
>sp|Q7MF00|GLPB_VIBVY Anaerobic glycerol-3-phosphate dehydrogenase subunit B (Anaerobic
G-3-P dehydrogenase subunit B) (Anaerobic G3Pdhase B)
Length = 438
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +1
Query: 34 QKTVIKCVLESNEAFNHIEDADIQTTMDKFTSLKENPAVVKTTDLLFETKIAIQIIVNSR 213
Q + K L+ + F H E +IQ T+ +L+ NP +++ D+ +R
Sbjct: 155 QPLLAKDNLKKHPDFQHCEIGEIQVTIPGCEALRRNPNELRSIDI-------------AR 201
Query: 214 GIIGQQQCNNLCQSFIKVLSDEEVV 288
+ Q N+LC +K + E++V
Sbjct: 202 LLKQPQAFNSLCHQLMKHATQEDLV 226
>sp|Q8D7Y4|GLPB_VIBVU Anaerobic glycerol-3-phosphate dehydrogenase subunit B (Anaerobic
G-3-P dehydrogenase subunit B) (Anaerobic G3Pdhase B)
Length = 438
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +1
Query: 34 QKTVIKCVLESNEAFNHIEDADIQTTMDKFTSLKENPAVVKTTDLLFETKIAIQIIVNSR 213
Q + K L+ + F H E +IQ T+ +L+ NP +++ D+ +R
Sbjct: 155 QPLLAKDNLKKHPDFQHCEIGEIQVTIPGCEALRRNPNELRSIDI-------------AR 201
Query: 214 GIIGQQQCNNLCQSFIKVLSDEEVV 288
+ Q N+LC +K + E++V
Sbjct: 202 LLKQPQAFNSLCHQLMKHATQEDLV 226
>sp|P33561|RHO_BORBU Transcription termination factor rho
Length = 515
Score = 30.4 bits (67), Expect = 2.9
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = +1
Query: 10 ENNISRIEQKTVIKCVLESNEAFNHIEDADIQTTMDK-FTSLKENPAVVKTTDLLFETKI 186
ENNI +EQ +IK FN + +I+ DK T +++ + T + T
Sbjct: 76 ENNIKTLEQSNIIK-------FFNGKDYVEIEKLYDKPITEVRKIVEGLGTNHTIAVTMK 128
Query: 187 AIQIIVNSRGIIGQQQCNNLCQSFIKVLSDEEVVKQTVIN---SRKNDVLV--SVLSDFN 351
++I I+ + + L + VLSD +T N S NDV V S + FN
Sbjct: 129 KTELIFLLVKILSENNIDVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVSPSQIRLFN 188
Query: 352 LNNG 363
L G
Sbjct: 189 LRTG 192
>sp|P32786|RRN6_YEAST RNA polymerase I-specific transcription initiation factor RRN6
Length = 894
Score = 29.3 bits (64), Expect = 6.4
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 85 IEDADIQTTMDKFTSLK-ENPAVVKTTD-LLFETKIAIQIIVNSRGIIGQQQCNNLCQSF 258
++ A + + +T+ K ENP ++ D L E + + I+V S LC +
Sbjct: 20 VQGASLYCPQENYTTKKQENPQWLRPVDDTLAEDALDLHIVVKSL----------LCDTA 69
Query: 259 IKVLSDEEVVKQTVINSRKNDVLVSVLSDFNLNNGHSDL 375
I+ +SD++V+++ + +D++ S + + N G + +
Sbjct: 70 IRYISDDKVLQE---SDADDDLITSDIDEDTDNQGDTSI 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,460,253
Number of Sequences: 369166
Number of extensions: 1011655
Number of successful extensions: 2587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2586
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)