Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M04
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31395|STMN1_CHICK Stathmin 34 0.12
sp|Q89YY3|CLPB_BACTN Chaperone clpB 34 0.16
sp|P16949|STMN1_HUMAN Stathmin (Phosphoprotein p19) (pp19) ... 33 0.27
sp|P13668|STMN1_RAT Stathmin (Phosphoprotein p19) (pp19) (O... 33 0.27
sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 (180 kDa r... 33 0.36
sp|Q8D2B6|Y438_WIGBR Hypothetical UPF0350 protein WIGBR4380 33 0.36
sp|P54227|STMN1_MOUSE Stathmin (Phosphoprotein p19) (pp19) ... 32 0.61
sp|P93484|VSR1_PEA Vacuolar sorting receptor 1 precursor (B... 32 0.61
sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromo... 32 0.80
sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 del... 32 0.80
>sp|P31395|STMN1_CHICK Stathmin
Length = 148
Score = 34.3 bits (77), Expect = 0.12
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = +1
Query: 40 EYKFDLSRKGDDKCEELNGKID--EECEDPYEA-LDKECDPKYEVLDKECLPKYVEVNAN 210
E+ +K D EE+ K++ EE +EA + K+ K E +KE L K +E N N
Sbjct: 34 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREH-EKEVLQKAIEENNN 92
Query: 211 FAKSVVDAKV-KCENNQSKKSRQVVRNLEKIIFGD--YDKIDKTCDGK 345
F+K + K E N+ + Q+ LE++ D +++ K +GK
Sbjct: 93 FSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKEGK 140
>sp|Q89YY3|CLPB_BACTN Chaperone clpB
Length = 862
Score = 33.9 bits (76), Expect = 0.16
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Frame = +1
Query: 73 DKCEELNGKIDEECEDPYEALDKECD-PKYEVLDKECLPKYVEVNANFAKSVVDAKVKCE 249
++ +E++ KI ++ E EA+ +E D PK E++ KE L + EV +F AK + E
Sbjct: 408 EELDEISRKI-KQLEIEREAIKRENDKPKLEIIGKE-LAELKEVEKSFK-----AKWQSE 460
Query: 250 NNQSKKSRQVVRNLEKIIF--------GDYDKIDKTCDGKYAELDKSCLKRYEDL 390
K +Q +E + F GDY K+ + GK LDK E L
Sbjct: 461 KTLMDKIQQNKVEIENLKFEAEKAEREGDYGKVAEIRYGKLQALDKEIEDTQEKL 515
>sp|P16949|STMN1_HUMAN Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18)
(Leukemia-associated phosphoprotein p18) (pp17)
(Prosolin) (Metablastin) (Pr22 protein)
Length = 149
Score = 33.1 bits (74), Expect = 0.27
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 40 EYKFDLSRKGDDKCEELNGKID--EECEDPYEA-LDKECDPKYEVLDKECLPKYVEVNAN 210
E+ +K D EE+ K++ EE +EA + K+ K E +KE L K +E N N
Sbjct: 34 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREH-EKEVLQKAIEENNN 92
Query: 211 FAKSVVDAKV-KCENNQSKKSRQVVRNLEKI 300
F+K + K E N+ + Q+ LE++
Sbjct: 93 FSKMAEEKLTHKMEANKENREAQMAAKLERL 123
>sp|P13668|STMN1_RAT Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18)
(Leukemia-associated phosphoprotein p18) (pp17)
(Prosolin) (Metablastin) (Pr22 protein)
Length = 149
Score = 33.1 bits (74), Expect = 0.27
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 40 EYKFDLSRKGDDKCEELNGKID--EECEDPYEA-LDKECDPKYEVLDKECLPKYVEVNAN 210
E+ +K D EE+ K++ EE +EA + K+ K E +KE L K +E N N
Sbjct: 34 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREH-EKEVLQKAIEENNN 92
Query: 211 FAKSVVDAKV-KCENNQSKKSRQVVRNLEKI 300
F+K + K E N+ + Q+ LE++
Sbjct: 93 FSKMAEEKLTHKMEANKENREAQMAAKLERL 123
>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 (180 kDa ribosome receptor) (RRp)
Length = 1534
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 73 DKCEELNGKIDEECEDPYEALDKECDPKYEVL-DKECLPKYVEVNANFAKSVVDAKVKCE 249
D +L K+ E E+ L ECD +L + E + K ++ + + V AKV
Sbjct: 1234 DPSSDLASKL-REAEETQNNLQAECDQYRTILAETEGMLKDLQKSVEEEEQVWKAKVSAT 1292
Query: 250 NNQSKKSRQVVRNLEKII 303
+ +KSR V++LE I+
Sbjct: 1293 EEELQKSRVTVKHLEDIV 1310
>sp|Q8D2B6|Y438_WIGBR Hypothetical UPF0350 protein WIGBR4380
Length = 84
Score = 32.7 bits (73), Expect = 0.36
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 355 ILHIFHHKFYRFYHNHQKLFFPNFLQLDDFFYFDC 251
I++ F K + F N +K+FF N L DD + + C
Sbjct: 23 IINNFFKKEFDFLSNKEKIFFVNMLSYDDIYLYKC 57
>sp|P54227|STMN1_MOUSE Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein 18) (Op18)
(Leukemia-associated phosphoprotein p18) (pp17)
(Prosolin) (Metablastin) (Pr22 protein)
(Leukemia-associated gene protein)
Length = 149
Score = 32.0 bits (71), Expect = 0.61
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +1
Query: 61 RKGDDKCEELNGKID--EECEDPYEA-LDKECDPKYEVLDKECLPKYVEVNANFAKSVVD 231
+K D EE+ K++ EE +EA + K+ K E +KE L K +E N NF+K +
Sbjct: 41 KKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREH-EKEVLQKAIEENNNFSKMAEE 99
Query: 232 AKV-KCENNQSKKSRQVVRNLEKI 300
K E N+ + Q+ LE++
Sbjct: 100 KLTHKMEANKENREAQMAAKLERL 123
>sp|P93484|VSR1_PEA Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein
binding protein)
Length = 623
Score = 32.0 bits (71), Expect = 0.61
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 223 VVDAKVKCENNQSKKSRQVVRNLEKIIFGDYDKIDKTCDGKYAELDKSCLKRYED 387
V D +++C + K +++ ++ K + D +KIDK A+ + S LK +D
Sbjct: 301 VTDFQIRCPMKEKKYNKECANSVIKSLGLDVEKIDKCMGDPNADTENSILKEEQD 355
>sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III
Length = 1010
Score = 31.6 bits (70), Expect = 0.80
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +1
Query: 73 DKCEELNGKIDEECEDPYEALDKECD----PKYEVLDKECLPKYVEVNANFAKSVVDAKV 240
D+ E+L+ +D + P EA +++ D K +++D + VN A A+V
Sbjct: 393 DEVEDLDMDMDITEQQPCEAGNQQNDGLQLQKEDLMDISVIRDSPAVNDTMAVFQSPARV 452
Query: 241 KCENNQSKKSRQVVRNLEKIIFGDYDKIDKTCDGKYAELDKS 366
K N S ++ + + I+FGD ID+T + L KS
Sbjct: 453 KIGANNS-----IIDSQKSIVFGDEMSIDETQNDGTLTLPKS 489
>sp|O14617|AP3D1_HUMAN Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3)
(AP-3 complex delta subunit) (Delta-adaptin)
Length = 1153
Score = 31.6 bits (70), Expect = 0.80
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 103 DEECEDPYEALDKECDPKYEVLDKECLPKYVEVNANFAKS------VVDAKVKCENNQSK 264
D++ DPY ALD + D + D E LP N +KS +V+ K K + K
Sbjct: 792 DKDPNDPYRALDIDLDK--PLADSEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKEK 849
Query: 265 KSRQVVRNLEK 297
K ++ R+ EK
Sbjct: 850 KHKEKERDKEK 860
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,580,561
Number of Sequences: 369166
Number of extensions: 735716
Number of successful extensions: 2262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)