Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L08
(607 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29401|TKT_HUMAN Transketolase (TK) 65 2e-10
sp|Q5R1W6|TKT_PANTR Transketolase (TK) 65 2e-10
sp|Q60HC7|TKT_MACFA Transketolase (TK) 65 2e-10
sp|P40142|TKT_MOUSE Transketolase (TK) (P68) 64 2e-10
sp|Q6B855|TKT_BOVIN Transketolase (TK) 64 2e-10
sp|P50137|TKT_RAT Transketolase (TK) 64 2e-10
sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2)... 44 3e-04
sp|Q58094|TKTN_METJA Putative transketolase N-terminal sect... 39 0.010
sp|P33570|TKT2_ECOLI Transketolase 2 (TK 2) 34 0.33
sp|P30868|UIDB_ECOLI Glucuronide carrier protein (Glucuroni... 34 0.33
>sp|P29401|TKT_HUMAN Transketolase (TK)
Length = 623
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSK 75
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKIT 3
F+L KGHAAPILYA W EAG L E+LNLRKI+
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLAEAELLNLRKIS 104
>sp|Q5R1W6|TKT_PANTR Transketolase (TK)
Length = 623
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSK 75
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKIT 3
F+L KGHAAPILYA W EAG L E+LNLRKI+
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLAEAELLNLRKIS 104
>sp|Q60HC7|TKT_MACFA Transketolase (TK)
Length = 623
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSK 75
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKIT 3
F+L KGHAAPILYA W EAG L E+LNLRKI+
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLPEAELLNLRKIS 104
>sp|P40142|TKT_MOUSE Transketolase (TK) (P68)
Length = 623
Score = 64.3 bits (155), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKALDPRNPHNDRFVLSK 75
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKIT 3
F+L KGHAAPILYA W EAG L E+LNLRKI+
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLPEAELLNLRKIS 104
>sp|Q6B855|TKT_BOVIN Transketolase (TK)
Length = 623
Score = 64.3 bits (155), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKALDPRNPHNDRFVLSK 75
Score = 53.5 bits (127), Expect = 4e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKI 6
F+L KGHAAPILYA W EAG L E+LNLRKI
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLPESELLNLRKI 103
>sp|P50137|TKT_RAT Transketolase (TK)
Length = 623
Score = 64.3 bits (155), Expect = 2e-10
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HPTSC S AEIM+VLFF M+Y DPRNP+NDRF+LSK
Sbjct: 37 HPTSCCSAAEIMAVLFFHTMRYKALDPRNPHNDRFVLSK 75
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKIT 3
F+L KGHAAPILYA W EAG L E+LNLRKI+
Sbjct: 71 FVLSKGHAAPILYAVWAEAGFLPEAELLNLRKIS 104
>sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2) (TK 2) (Transketolase
related protein)
Length = 557
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2
Query: 216 MSVLFFDVMKYHVHDPRNPNNDRFILSK 133
MSVLFF +M+Y DP NP+NDRF+L+K
Sbjct: 1 MSVLFFYIMRYKQSDPENPDNDRFVLAK 28
>sp|Q58094|TKTN_METJA Putative transketolase N-terminal section (TK)
Length = 274
Score = 38.9 bits (89), Expect = 0.010
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -3
Query: 104 FILIKGHAAPILYAAWVEAGLLKPDEILNLRKI 6
F+L KGHAAP LYA E G+++ +E+ LR++
Sbjct: 66 FVLSKGHAAPALYAVLSELGIIEEEELWKLRRL 98
Score = 35.0 bits (79), Expect = 0.15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILSK 133
HP S +I+ L+F +M Y +P + DRF+LSK
Sbjct: 32 HPGGSLSATDIIVALYFKLMNYSPDNPYKKDRDRFVLSK 70
>sp|P33570|TKT2_ECOLI Transketolase 2 (TK 2)
Length = 667
Score = 33.9 bits (76), Expect = 0.33
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 249 HPTSCASMAEIMSVLFFDVMKYHVHDPRNPNNDRFILS 136
HP + MA+I VL+ D +K++ DP + DRFILS
Sbjct: 25 HPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILS 62
>sp|P30868|UIDB_ECOLI Glucuronide carrier protein (Glucuronide permease)
Length = 457
Score = 33.9 bits (76), Expect = 0.33
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 432 FWLT*RQWSHGVAVVYYWWNFLGIKLCYLL 521
FW+ WSHG VVY + ++G+ LCY L
Sbjct: 97 FWVL-TDWSHGSKVVYAYLTYMGLGLCYSL 125
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,812,797
Number of Sequences: 369166
Number of extensions: 1207058
Number of successful extensions: 2304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)