Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L04
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 211 2e-54
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 210 4e-54
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 208 1e-53
sp|P55097|CATK_MOUSE Cathepsin K precursor 206 6e-53
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 206 6e-53
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 205 1e-52
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 205 1e-52
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 204 2e-52
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 204 2e-52
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 202 6e-52
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 211 bits (537), Expect = 2e-54
Identities = 98/202 (48%), Positives = 139/202 (68%), Gaps = 2/202 (0%)
Frame = +1
Query: 70 NDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYADLTH 249
+D W+ +K Y K Y + RR IWE+N+++IQ HNL +DLG +Y LG+N++ D+T
Sbjct: 18 DDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 77
Query: 250 EEFKIKFLGLKPINRNYSRTIFMPPENMDN--YPKSVDWRKKGYVTPVKNQGQCGSCWSF 423
EEFK K+L ++R P +N P +DWR+ GYVT VK+QG CGSCW+F
Sbjct: 78 EEFKAKYL--TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAF 135
Query: 424 STTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKYGLESEADY 603
STTG +EGQ+ + + +S SEQQLVDCS + NNGC+GGLM+NA+QY++++GLE+E+ Y
Sbjct: 136 STTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSY 195
Query: 604 PYTAMDGPCKYDSTKVVAHCTG 669
PYTA++G C+Y+ VA TG
Sbjct: 196 PYTAVEGQCRYNKQLGVAKVTG 217
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 210 bits (534), Expect = 4e-54
Identities = 109/223 (48%), Positives = 147/223 (65%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 VLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHN 183
+LLL + L ++ + ++ N +W+ +K+ +++ Y + E RR +WE+N+R IQ HN
Sbjct: 4 LLLLAVLCLGTALATPKFDQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLHN 63
Query: 184 LEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWR 363
EY GKH + + +N + D+T+EEF+ G + R +F P M PK+VDWR
Sbjct: 64 GEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGR-LFQEPL-MLQIPKTVDWR 121
Query: 364 KKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGG 543
+KG VTPVKNQGQCGSCW+FS +G LEGQ F K +L+SLSEQ LVDCS D N GCNGG
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGG 181
Query: 544 LMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
LMD AFQYI++ GL+SE YPY A DG CKY + VA+ TG
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTG 224
Score = 37.4 bits (85), Expect = 0.045
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
GFVDI + EK L KAVATVGPISVAM
Sbjct: 224 GFVDIPQ-QEKALMKAVATVGPISVAM 249
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 208 bits (530), Expect = 1e-53
Identities = 110/223 (49%), Positives = 146/223 (65%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 VLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHN 183
VL F + + S+ KF N L+ +W +K +++ Y + E RR +WE+N++ I+ HN
Sbjct: 6 VLAAFCLGIASAVPKFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHN 63
Query: 184 LEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWR 363
EY GKH + + +N + D+T+EEF+ + +G + +F P +D PKSVDWR
Sbjct: 64 GEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWR 121
Query: 364 KKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGG 543
KKGYVTPVKNQ QCGSCW+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGG
Sbjct: 122 KKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGG 181
Query: 544 LMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
M AFQY+++ GL+SE YPY A+D CKY VA+ TG
Sbjct: 182 FMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTG 224
Score = 38.1 bits (87), Expect = 0.026
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
GF + G EK L KAVATVGPISVAM
Sbjct: 224 GFTVVAPGKEKALMKAVATVGPISVAM 250
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 206 bits (524), Expect = 6e-53
Identities = 108/219 (49%), Positives = 140/219 (63%), Gaps = 3/219 (1%)
Frame = +1
Query: 22 ILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLEYDL 198
+LL +F E L+ +W L+K +QK Y S V E++RR+IWE+NL+ I HNLE L
Sbjct: 7 LLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASL 66
Query: 199 GKHSYYLGVNEYADLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRKKGY 375
G H+Y L +N D+T EE K GL+ P +R+YS PE P S+D+RKKGY
Sbjct: 67 GVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGY 126
Query: 376 VTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDN 555
VTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG M
Sbjct: 127 VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVT--ENYGCGGGYMTT 184
Query: 556 AFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
AFQY+Q+ G++SE YPY D C Y++T A C G
Sbjct: 185 AFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRG 223
Score = 33.9 bits (76), Expect = 0.50
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
G+ +I GNEK L +AVA VGPISV++
Sbjct: 223 GYREIPVGNEKALKRAVARVGPISVSI 249
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 206 bits (524), Expect = 6e-53
Identities = 109/223 (48%), Positives = 146/223 (65%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 VLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHN 183
+LLL + L ++ + ++ + EW+ +K+ +++ Y + E RR IWE+N+R IQ HN
Sbjct: 4 LLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHN 63
Query: 184 LEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWR 363
EY G+H + + +N + D+T+EEF+ G + R +F P M PKSVDWR
Sbjct: 64 GEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGR-LFQEPL-MLKIPKSVDWR 121
Query: 364 KKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGG 543
+KG VTPVKNQGQCGSCW+FS +G LEGQ F K +L+SLSEQ LVDCS N GCNGG
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGG 181
Query: 544 LMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
LMD AFQYI++ GL+SE YPY A DG CKY + VA+ TG
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTG 224
Score = 37.4 bits (85), Expect = 0.045
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
GFVDI + EK L KAVATVGPISVAM
Sbjct: 224 GFVDIPQ-QEKALMKAVATVGPISVAM 249
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 205 bits (522), Expect = 1e-52
Identities = 109/222 (49%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Frame = +1
Query: 13 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 189
L +LL +F E L+ +W L+K Y K Y S V E++RR+IWE+NL++I HNLE
Sbjct: 4 LKVLLLPVVSFALHPEEILDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLE 63
Query: 190 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRK 366
LG H+Y L +N D+T EE K GLK P +R++S P+ P S+D+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRK 123
Query: 367 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 546
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENYGCGGGY 181
Query: 547 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
M NAFQY+Q+ G++SE YPY D C Y+ T A C G
Sbjct: 182 MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRG 223
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
G+ +I +GNEK L +AVA VGP+SVA+
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAI 249
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 205 bits (521), Expect = 1e-52
Identities = 107/223 (47%), Positives = 139/223 (62%), Gaps = 1/223 (0%)
Frame = +1
Query: 4 VLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHN 183
+L F + + S+ F + L +W +K + + Y E RR +WE+N++ I+ HN
Sbjct: 6 ILAAFCLGIASATLTF--DHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHN 63
Query: 184 LEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWR 363
EY GKHS+ + +N + D+T EEF+ G + NR + P+SVDWR
Sbjct: 64 QEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ--NRKPRKGKVFQEPLFYEAPRSVDWR 121
Query: 364 KKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGG 543
+KGYVTPVKNQGQCGSCW+FS TGALEGQ FRK +L+SLSEQ LVDCS N GCNGG
Sbjct: 122 EKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGG 181
Query: 544 LMDNAFQYIQ-KYGLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
LMD AFQY+Q GL+SE YPY A + CKY+ VA+ TG
Sbjct: 182 LMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTG 224
Score = 37.4 bits (85), Expect = 0.045
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
GFVDI K EK L KAVATVGPISVA+
Sbjct: 224 GFVDIPK-QEKALMKAVATVGPISVAI 249
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 204 bits (519), Expect = 2e-52
Identities = 109/222 (49%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Frame = +1
Query: 13 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 189
L +LL +F E L+ W L+K ++K Y + V E++RR+IWE+NL+YI HNLE
Sbjct: 4 LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLE 63
Query: 190 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRK 366
LG H+Y L +N D+T EE K GLK P++ + S PE P SVD+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK 123
Query: 367 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 546
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGY 181
Query: 547 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
M NAFQY+QK G++SE YPY + C Y+ T A C G
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG 223
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
G+ +I +GNEK L +AVA VGP+SVA+
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAI 249
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 204 bits (519), Expect = 2e-52
Identities = 109/222 (49%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Frame = +1
Query: 13 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 189
L +LL +F E L+ W L+K ++K Y S V E++RR+IWE+NL+YI HNLE
Sbjct: 4 LKVLLLPVMSFALYPEEILDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLE 63
Query: 190 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRK 366
LG H+Y L +N D+T+EE K GLK P + + S P+ P SVD+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRK 123
Query: 367 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 546
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGY 181
Query: 547 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTG 669
M NAFQY+QK G++SE YPY + C Y+ T A C G
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG 223
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
G+ +I +GNEK L +AVA VGP+SVA+
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAI 249
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 202 bits (515), Expect = 6e-52
Identities = 105/216 (48%), Positives = 139/216 (64%), Gaps = 2/216 (0%)
Frame = +1
Query: 28 LRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKH 207
+ S+A KF ++ LN +W +K +++ Y E RR +WE+N++ I+ HN EY GKH
Sbjct: 14 IASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKH 71
Query: 208 SYYLGVNEYADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPV 387
+ + +N + D+T+EEF+ G + N+ + + PKSVDWR+KGYVTPV
Sbjct: 72 GFTMAMNAFGDMTNEEFRQVMNGFQ--NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPV 129
Query: 388 KNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQY 567
KNQGQCGSCW+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGGLMDNAF+Y
Sbjct: 130 KNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRY 189
Query: 568 IQ-KYGLESEADYPYTAMD-GPCKYDSTKVVAHCTG 669
++ GL+SE YPY D C Y A+ TG
Sbjct: 190 VKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTG 225
Score = 33.9 bits (76), Expect = 0.50
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GFVDIKKGNEKDLTKAVATVGPISVAM 748
GFVD+ + EK L KAVAT+GPISVA+
Sbjct: 225 GFVDLPQ-REKALMKAVATLGPISVAI 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,234,980
Number of Sequences: 369166
Number of extensions: 1787258
Number of successful extensions: 5324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4976
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)