Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K24
(564 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 216 3e-56
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 216 4e-56
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 216 4e-56
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 210 2e-54
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 203 3e-52
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 201 1e-51
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 201 1e-51
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 192 5e-49
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 149 5e-36
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 146 4e-35
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 216 bits (550), Expect = 3e-56
Identities = 99/141 (70%), Positives = 118/141 (83%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR
Sbjct: 275 RFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRR 334
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K+ VD RLK++EE S GKLKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 335 LQRDLKRTVDARLKMSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTKK Y+EIGPSICRHNPVFG
Sbjct: 395 HTKKDYEEIGPSICRHNPVFG 415
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 216 bits (549), Expect = 4e-56
Identities = 99/141 (70%), Positives = 118/141 (83%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR
Sbjct: 275 RFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRR 334
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 335 LQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTKK Y+EIGPSICRHNPVFG
Sbjct: 395 HTKKDYEEIGPSICRHNPVFG 415
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 216 bits (549), Expect = 4e-56
Identities = 99/141 (70%), Positives = 118/141 (83%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR
Sbjct: 275 RFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRR 334
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 335 LQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTKK Y+EIGPSICRHNPVFG
Sbjct: 395 HTKKDYEEIGPSICRHNPVFG 415
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 210 bits (534), Expect = 2e-54
Identities = 94/141 (66%), Positives = 116/141 (82%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N DF +S++VD VIQ+CPID RRPLYNNIVLSGGS+MFK RR
Sbjct: 275 RFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRR 334
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRDIK+ VD RL+++E S G++KP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 335 LQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTK Y+E GPSICRHNPVFG
Sbjct: 395 HTKAAYEEYGPSICRHNPVFG 415
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 203 bits (516), Expect = 3e-52
Identities = 91/141 (64%), Positives = 115/141 (81%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PE ++DF T + VVD IQSCPID+RR LY NIVLSGGS+MFK +R
Sbjct: 283 RFLGPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGSTMFKDFGKR 342
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRDIK+ VD+R+K +EE S G++K +DVKV+SH MQR+AVWFGG++LAS+ +FY
Sbjct: 343 LQRDIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRFAVWFGGSMLASTPEFYKVC 402
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTK+QYDE+GPSICRHNPVFG
Sbjct: 403 HTKQQYDEVGPSICRHNPVFG 423
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 201 bits (511), Expect = 1e-51
Identities = 91/141 (64%), Positives = 115/141 (81%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N DF T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R+
Sbjct: 283 RFLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARK 342
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS+ +FY +
Sbjct: 343 LQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVS 402
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
H+K +Y E GPSICR+NPVFG
Sbjct: 403 HSKAEYMEKGPSICRYNPVFG 423
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 201 bits (510), Expect = 1e-51
Identities = 91/141 (64%), Positives = 115/141 (81%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PEF N +F T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R+
Sbjct: 282 RFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARK 341
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS+ +FY +
Sbjct: 342 LQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVS 401
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTK +Y E GPSICR+NPVFG
Sbjct: 402 HTKAEYMERGPSICRYNPVFG 422
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 192 bits (488), Expect = 5e-49
Identities = 88/141 (62%), Positives = 110/141 (78%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FLGPE+FF PE ++D+ T + VVD IQSCPID RR LY NIVLSGGS+MFK +R
Sbjct: 275 RFLGPELFFNPEIASSDYLTPLPKVVDDTIQSCPIDCRRGLYKNIVLSGGSTMFKDFGKR 334
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K+ VD+R+K +EE S GK+K P+ V V+SH+MQRYAVWFGG++LAS+ +FY
Sbjct: 335 LQRDVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRYAVWFGGSMLASTPEFYNVC 394
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTK QYDEIGPSICR N V G
Sbjct: 395 HTKAQYDEIGPSICRFNTVIG 415
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 149 bits (376), Expect = 5e-36
Identities = 75/140 (53%), Positives = 97/140 (69%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+FL PE+FF PE ++DF T + VVD IQ+CPID R+ LYNNIVLSGGS+MFK RR
Sbjct: 309 RFLAPEIFFNPEIASSDFLTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFKDFGRR 368
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRD+K +V+ R+ +E S K T +DV V+SH QR AVWFGG+LLA + +F
Sbjct: 369 LQRDLKSIVNNRIAQSELLS--GTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAEFKGYC 426
Query: 362 HTKKQYDEIGPSICRHNPVF 421
HTKK Y+E GP I R+ +F
Sbjct: 427 HTKKDYEEYGPEIVRNFSLF 446
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 146 bits (368), Expect = 4e-35
Identities = 72/141 (51%), Positives = 97/141 (68%)
Frame = +2
Query: 2 KFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRR 181
+F+ PE+FF PE ++DF T + VVD VIQS PID RR LY NIVLSGGS+++K RR
Sbjct: 295 RFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRR 354
Query: 182 IQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTAA 361
+QRDIK++VD R+K +E S G K +DV+V++H QR+ WFGG+LL + +F +
Sbjct: 355 LQRDIKQLVDTRIKASEVRS-GGAKSGGLDVQVITHKRQRHGPWFGGSLLGQTPEFRSYC 413
Query: 362 HTKKQYDEIGPSICRHNPVFG 424
HTK +Y E GPSI R + G
Sbjct: 414 HTKAEYQEYGPSIVRRFALLG 434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,255,491
Number of Sequences: 369166
Number of extensions: 1405314
Number of successful extensions: 4128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3820
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)