Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K14
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa ... 428 e-119
sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa ... 426 e-119
sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa ... 425 e-119
sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa ... 423 e-118
sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa ... 395 e-110
sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa ... 376 e-104
sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1... 360 2e-99
sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (N... 348 7e-96
sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (N... 343 2e-94
sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (N... 343 2e-94
>sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 428 bits (1100), Expect = e-119
Identities = 197/244 (80%), Positives = 221/244 (90%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRER
Sbjct: 210 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRER 269
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N GTKLFNISGHVNNPCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK
Sbjct: 270 NSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPK 329
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
+VC++VLMDFD+L++AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 330 SVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV 389
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
WM K++ RFV G+A EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE R
Sbjct: 390 DWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEER 449
Query: 739 MKNY 750
M+ +
Sbjct: 450 MQQF 453
>sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 426 bits (1094), Expect = e-119
Identities = 197/244 (80%), Positives = 221/244 (90%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRER
Sbjct: 210 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRER 269
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK
Sbjct: 270 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPK 329
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
+VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 330 SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV 389
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
WM K++ RFV G+A EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE R
Sbjct: 390 DWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEER 449
Query: 739 MKNY 750
M+ +
Sbjct: 450 MQRF 453
>sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 425 bits (1093), Expect = e-119
Identities = 197/244 (80%), Positives = 221/244 (90%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRER
Sbjct: 210 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRER 269
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK
Sbjct: 270 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPK 329
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
+VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 330 SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV 389
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
WM K++ RFV G+A EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE R
Sbjct: 390 DWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDR 449
Query: 739 MKNY 750
M+ +
Sbjct: 450 MQRF 453
>sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 423 bits (1088), Expect = e-118
Identities = 196/244 (80%), Positives = 221/244 (90%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRER
Sbjct: 210 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRER 269
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK
Sbjct: 270 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPK 329
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
+VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYK+ESCGQCTPCREG
Sbjct: 330 SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGV 389
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
WM K++ RFV G+A EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE R
Sbjct: 390 DWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEER 449
Query: 739 MKNY 750
M+ +
Sbjct: 450 MQRF 453
>sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 493
Score = 395 bits (1014), Expect = e-110
Identities = 183/259 (70%), Positives = 219/259 (84%), Gaps = 9/259 (3%)
Frame = +1
Query: 1 IYLWRG---------TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTI 153
+YL RG T+LIES+EGK GKPRLKPPFPA +GLFGCP+TV+NVETVAVAPTI
Sbjct: 207 VYLHRGAGAYVCGEETSLIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTI 266
Query: 154 CRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNL 333
CRRGG WFA FGRERN+GTKLF ISGHVNNPCTVEE MSIP++ LI+KHC G+ GGWDNL
Sbjct: 267 CRRGGNWFAGFGRERNQGTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNL 326
Query: 334 LAVIPGGSSTPLIPKNVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFY 513
LAVIPGGSSTP++PK++CD+ LMDFD+L ++Q+ LGTAALIVM+K DVVR I+RL FY
Sbjct: 327 LAVIPGGSSTPILPKHICDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFY 386
Query: 514 KHESCGQCTPCREGTGWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWP 693
+HESCGQCTPCREG+ W ++I+KRF G + EIDML E++KQ+EGHTICALG+ AWP
Sbjct: 387 RHESCGQCTPCREGSKWTEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWP 446
Query: 694 VQGLIRHFRPELEMRMKNY 750
+QGLIRHFRPELE R++ +
Sbjct: 447 IQGLIRHFRPELEARIRKF 465
>sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 496
Score = 376 bits (965), Expect = e-104
Identities = 175/259 (67%), Positives = 210/259 (81%), Gaps = 9/259 (3%)
Frame = +1
Query: 1 IYLWRG---------TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTI 153
+Y+ RG T+LIESIEGK GKPRLKPPFPA +GLFGCP+TV+NVETVAV PTI
Sbjct: 209 VYIHRGMGAYVCGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTI 268
Query: 154 CRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNL 333
RRG WF+ FGRERN GTKLF ISGHVNNPCTVEE MSI L+ +I++HC G+ GGWDNL
Sbjct: 269 MRRGASWFSSFGRERNAGTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNL 328
Query: 334 LAVIPGGSSTPLIPKNVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFY 513
LAVIPGGSSTP++PK +CD LMDFD+L ++Q+ LGTAA+IVM+K D+VR I+RL FY
Sbjct: 329 LAVIPGGSSTPVLPKTICDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFY 388
Query: 514 KHESCGQCTPCREGTGWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWP 693
KHESCGQCTPCREG+ W +++R G A + EIDML E++KQ+EGHTICALG+ AWP
Sbjct: 389 KHESCGQCTPCREGSKWTMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWP 448
Query: 694 VQGLIRHFRPELEMRMKNY 750
+QGLIRHFRPELE R++ Y
Sbjct: 449 IQGLIRHFRPELEARIREY 467
>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1 (NADH dehydrogenase I, chain
F 1) (NDH-1, chain F 1)
Length = 434
Score = 360 bits (925), Expect = 2e-99
Identities = 161/244 (65%), Positives = 198/244 (81%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TAL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV+NVE++AV PTI RRG W+ FGR
Sbjct: 176 TALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPN 235
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N GTKL+++SGHVN PCTVE+ MSIP LIEKHC GI GGWDNLLAVIPGGSS P +P
Sbjct: 236 NHGTKLYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPG 295
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
+MD+D L E + LGTAA+IVM+K D+++ I RL FYKHESCGQCTPCREGT
Sbjct: 296 AQMKDAIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGT 355
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
GWM ++++R V G A K EIDML++++KQ+EGHTICALGD AAWP+QGLI+HFRPE+E R
Sbjct: 356 GWMMRVMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKR 415
Query: 739 MKNY 750
+ Y
Sbjct: 416 IDEY 419
>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 348 bits (894), Expect = 7e-96
Identities = 162/259 (62%), Positives = 199/259 (76%), Gaps = 9/259 (3%)
Frame = +1
Query: 1 IYLWRG---------TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTI 153
IYL RG TAL+ES+EGK+G PRLKPPFPA GL+GCPTT++NVE++AV PTI
Sbjct: 161 IYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTI 220
Query: 154 CRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNL 333
RRG WFA G+ N GTK+F ISGHVN PC +EE M +PLK LIEK+ G+ GGW+NL
Sbjct: 221 LRRGASWFAAIGKPNNTGTKVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNL 280
Query: 334 LAVIPGGSSTPLIPKNVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFY 513
A+IPGG+S PL+PK++C+ V MDFDSL + LGT +IVM+K D++ IARL FY
Sbjct: 281 KAIIPGGASVPLLPKSLCE-VEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFY 339
Query: 514 KHESCGQCTPCREGTGWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWP 693
HESCGQCTPCREGTGWM +++ R VNGNA K EID L ++K+IEGHTICALGD AAWP
Sbjct: 340 MHESCGQCTPCREGTGWMWRVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWP 399
Query: 694 VQGLIRHFRPELEMRMKNY 750
+QGLIRHFR E+E R+K++
Sbjct: 400 IQGLIRHFRDEIEQRIKSF 418
>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 343 bits (881), Expect = 2e-94
Identities = 163/258 (63%), Positives = 196/258 (75%), Gaps = 9/258 (3%)
Frame = +1
Query: 1 IYLWRG---------TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTI 153
IYL RG TAL+ES+EGK+G PRLKPPFPA GL+GCPTT++NVE++AV PTI
Sbjct: 161 IYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTI 220
Query: 154 CRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNL 333
RRG WFA G+ N GTK+F ISGHVN PC VEE M I LK LIEK+ G+ GGWDNL
Sbjct: 221 LRRGASWFAGIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNL 280
Query: 334 LAVIPGGSSTPLIPKNVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFY 513
A+IPGGSS PL+PK++C+ V MDFDSL A + LGT +IVM++ D++ IARL FY
Sbjct: 281 KAIIPGGSSVPLLPKSLCE-VDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFY 339
Query: 514 KHESCGQCTPCREGTGWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWP 693
HESCGQCTPCREGTGWM +++ R V GN K EID L ++K+IEGHTICALGD AAWP
Sbjct: 340 MHESCGQCTPCREGTGWMWRVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWP 399
Query: 694 VQGLIRHFRPELEMRMKN 747
+QGLIRHFR E+E R+K+
Sbjct: 400 IQGLIRHFRSEIEARIKS 417
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 431
Score = 343 bits (881), Expect = 2e-94
Identities = 155/245 (63%), Positives = 194/245 (79%)
Frame = +1
Query: 19 TALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRER 198
TAL+ES+EGK+G PR+KPPFPA GL+GCPTTV+NVE++AV PTI RRGG WFA GR
Sbjct: 177 TALLESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPN 236
Query: 199 NKGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPK 378
N G KLF +SGHVN PC VEE MSI +K LIEKH G+ GGW NL AVIPGG+S P+IP
Sbjct: 237 NTGVKLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPA 296
Query: 379 NVCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGT 558
++C+ +MD+D + E Q++ GTA LIVM++ D+++ IARL F+KHESCGQCTPCREGT
Sbjct: 297 HLCEDAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGT 356
Query: 559 GWMQKIVKRFVNGNAVKPEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEMR 738
WM ++++R V G A EIDML+ ++KQ+EGHTICALGD AAWP+QGLIRH+R E+E R
Sbjct: 357 SWMWRVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDR 416
Query: 739 MKNYK 753
+K K
Sbjct: 417 IKARK 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,808,800
Number of Sequences: 369166
Number of extensions: 1923221
Number of successful extensions: 4914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4883
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)