Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K12
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1) 33 0.79
sp|Q04347|BUD22_YEAST Bud site selection protein 22 33 0.79
sp|P31916|MAT2_EUGGR Maturase-like protein 2 32 1.8
sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair rad50 ... 32 1.8
sp|P10499|KCNA1_RAT Potassium voltage-gated channel subfami... 32 2.3
sp|P16388|KCNA1_MOUSE Potassium voltage-gated channel subfa... 32 2.3
sp|Q09470|KCNA1_HUMAN Potassium voltage-gated channel subfa... 32 2.3
sp|P25386|USO1_YEAST Intracellular protein transport protei... 32 2.3
sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M) 32 2.3
sp|O66834|RECN_AQUAE DNA repair protein recN (Recombination... 31 5.1
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
Length = 1875
Score = 33.5 bits (75), Expect = 0.79
Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)
Frame = +2
Query: 80 DATENCAIINKKISERFYYSNSLNQPVEKSNDXXXXXXXXXXXXXYSRTFSDKVMSHSNT 259
++TEN +++NK+I + + + ++ + K S ++++
Sbjct: 653 ESTENMSLLNKEIQDLYDSKSDISIKLGKEK-------------------SSRILAEERF 693
Query: 260 SL--NKLDLFSSKNENWQIVQEALTNALL---GKNVKNLNEVLGC---IRQVDEQFANNN 415
L N LDL ++N+ + + L N +L K + LNE + C + V+ + N
Sbjct: 694 KLLSNTLDLTKAENDQLRKRFDYLQNTILKQDSKTHETLNEYVSCKSKLSIVETELLNLK 753
Query: 416 IVDYYQTHILKNTLQKLQRQITNAKVLEERWIQFFRKSLPNVILIMSPLKTQQEFIERVS 595
+ H+ KN Q+L K+ E+ ++ ++++ L+T Q+ ER
Sbjct: 754 EEQKLRVHLEKNLKQELN------KLSPEK---------DSLRIMVTQLQTLQK--ERED 796
Query: 596 LYEFKRR--LTKVEDLKKKLMTAKNDIS-KDWSVLQ 694
L E R+ K+++L+ L K + S KD + Q
Sbjct: 797 LLEETRKSCQKKIDELEDALSELKKETSQKDHHIKQ 832
>sp|Q04347|BUD22_YEAST Bud site selection protein 22
Length = 519
Score = 33.5 bits (75), Expect = 0.79
Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Frame = +2
Query: 323 LTNALLGKNVKNLNEVLGCI------RQVDEQFAN--NNIVDYYQTHI---LKNTLQKLQ 469
L N + KN K + ++L + +++DE ++ NN + YY+TH+ +K +QK+
Sbjct: 39 LYNCIGKKNKKKIEKLLNSLELKTLDKELDESYSKLLNNKIHYYETHLSKCIKEQIQKIS 98
Query: 470 RQITNAKVLEERWIQFFRKSLPNVILIMSPLKTQQEFIERVSLYEFKRRLTKV--EDLKK 643
++ ++KV + +K+ I I L TQ ++ ++L+ + RL K+ + +K+
Sbjct: 99 KK-NSSKVKDA------QKNKSPSIDIEKMLATQLS-LDDLALFMTRFRLIKILHQRIKQ 150
Query: 644 KLMTAKNDI-SKDW 682
K + D +K W
Sbjct: 151 KSKKIEGDTNNKTW 164
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
Length = 758
Score = 32.3 bits (72), Expect = 1.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 229 KCSRIFTQLFLFYFQKKSIIAFFYRLIQTIRIIKSFTDFFINYRTIFCCISLI 71
+C F + F KK +FF ++ RI+K F FFIN F + LI
Sbjct: 453 RCFNFFKKNCYPNFYKKKNFSFFNFYTESFRILKFFDAFFINTHHFFLPVELI 505
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair rad50 ATPase
Length = 880
Score = 32.3 bits (72), Expect = 1.8
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +2
Query: 446 KNTLQKLQRQITNAKV-LEERWIQFFRKSLPNVILIMSPLKTQQEFIERVSLY--EFKRR 616
+ L KL+R++++ LEE +KS+ + + LK ++E E+ L + ++
Sbjct: 666 RERLVKLEREVSSLTARLEE-----LKKSVEQIKATLRKLKEEKEEREKAKLEIKKLEKA 720
Query: 617 LTKVEDLKKKLMTAK 661
L+KVEDL+KK+ K
Sbjct: 721 LSKVEDLRKKIKDYK 735
>sp|P10499|KCNA1_RAT Potassium voltage-gated channel subfamily A member 1 (Voltage-gated
potassium channel subunit Kv1.1) (IA) (RBKI) (RCK1)
Length = 495
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 223 SRIFTQLFLFYFQKKSIIAFFYRLIQTIRIIKSFTDFFINYRTIFCCISLIKYFIAI 53
S IFT F F + II F + L+ S TDFF N +++I YFI +
Sbjct: 214 SNIFTDPF-FIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITL 269
>sp|P16388|KCNA1_MOUSE Potassium voltage-gated channel subfamily A member 1 (Voltage-gated
potassium channel subunit Kv1.1) (MKI) (MBK1)
Length = 495
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 223 SRIFTQLFLFYFQKKSIIAFFYRLIQTIRIIKSFTDFFINYRTIFCCISLIKYFIAI 53
S IFT F F + II F + L+ S TDFF N +++I YFI +
Sbjct: 214 SNIFTDPF-FIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITL 269
>sp|Q09470|KCNA1_HUMAN Potassium voltage-gated channel subfamily A member 1 (Voltage-gated
potassium channel subunit Kv1.1) (HUKI) (HBK1)
Length = 495
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 223 SRIFTQLFLFYFQKKSIIAFFYRLIQTIRIIKSFTDFFINYRTIFCCISLIKYFIAI 53
S IFT F F + II F + L+ S TDFF N +++I YFI +
Sbjct: 214 SNIFTDPF-FIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITL 269
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 32.0 bits (71), Expect = 2.3
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = +2
Query: 266 NKLDLFSSKNENWQIVQEALTNALLGKNVKNLNEVLGCIRQVDEQF--ANNNIVDYYQTH 439
NK+D S + EN+QI + ++ KN++ L + + + Q E+ +++ D Y++
Sbjct: 1001 NKIDSMSQEKENFQIERGSIE-----KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQ 1055
Query: 440 ILKNTLQKLQRQITNAKVLEERWIQFFRKSLPNVILIMSPLKTQQEFIERVSLYE-FKRR 616
I L+ ++ A + NV I KT++E ++ Y+ K
Sbjct: 1056 I-----SLLKEKLETATTANDE----------NVNKISELTKTREELEAELAAYKNLKNE 1100
Query: 617 L-TKVEDLKKKLMTAKND 667
L TK+E +K L K +
Sbjct: 1101 LETKLETSEKALKEVKEN 1118
>sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M)
Length = 176
Score = 32.0 bits (71), Expect = 2.3
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = +2
Query: 221 RTFSDKVMSHSNTSLNKL---DLFSSKNENWQIVQEALTNALLGKNVKNLNEVLGCIRQV 391
R +DK++S N ++ D+ + + W EA+ AL + KN+N+ L + ++
Sbjct: 60 REHADKLLSFQNKRGGRILLQDIKKPERDEWGNGLEAMQCAL--QLEKNVNQALLDLHKI 117
Query: 392 DEQFANNNIVDYYQTHILK---NTLQKLQRQITN 484
+ ++ D+ +TH L ++KL ITN
Sbjct: 118 ASDKVDPHLCDFLETHYLNEQVEAIKKLGDHITN 151
>sp|O66834|RECN_AQUAE DNA repair protein recN (Recombination protein N)
Length = 520
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Frame = +2
Query: 215 YSRTFSDKVMSHSNTSLNKLDLFSSKNENWQIVQEALTNA----------LLGKNVKNLN 364
YS FS+ + +N +L++S E + E N L K K+
Sbjct: 234 YSGKFSELIEKIANLEEEVYELYNSLKEEMPEISEEEVNEINEKLFRIQRLEEKYKKSFP 293
Query: 365 EVLGCIRQVDEQFANNNIVDYYQTHILKNTLQKLQRQ 475
E+L + ++ E+ +N N VD+ + L+ ++KL+ +
Sbjct: 294 EILKEVEEIKEELSNLNSVDFKEEE-LREEVEKLREE 329
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,525,303
Number of Sequences: 369166
Number of extensions: 1551592
Number of successful extensions: 4519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4519
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)