Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K05
(497 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 183 2e-46
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 181 1e-45
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 178 5e-45
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 175 5e-44
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 174 8e-44
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 165 5e-41
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 164 1e-40
sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial prec... 160 2e-39
sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial precursor 159 3e-39
sp|P29197|CH60_ARATH Chaperonin CPN60, mitochondrial precur... 158 8e-39
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 183 bits (464), Expect = 2e-46
Identities = 95/166 (57%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
QL+I TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR EGI
Sbjct: 377 QLEITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGI 436
Query: 181 VVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V+GGG ALLRCIP LD L S D++IG+E++K AL+ P TIA NAG+ G ++V+K+L+
Sbjct: 437 VLGGGCALLRCIPALDSLKPSNEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQ 496
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
IGYDA ++V+M E GIIDP KVVRTAL DAA ASLL T+
Sbjct: 497 SSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTA 542
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 181 bits (458), Expect = 1e-45
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
QL I TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR EGI
Sbjct: 377 QLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGI 436
Query: 181 VVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V+GGG ALLRCIP LD L + D++IG+E++K AL+ P TIA NAG+ G ++V+K+L+
Sbjct: 437 VLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQ 496
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
+GYDA ++V+M E GIIDP KVVRTAL DAA ASLL T+
Sbjct: 497 SSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTA 542
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 178 bits (452), Expect = 5e-45
Identities = 90/166 (54%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
QL + TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR EGI
Sbjct: 377 QLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGI 436
Query: 181 VVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V+GGG ALLRCIP LD L + D++IG+E++K L+ P TIA NAG+ G ++V+K+++
Sbjct: 437 VLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ 496
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
+GYDA ++V+M E GIIDP KVVRTAL DAA ASLL T+
Sbjct: 497 SSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTA 542
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 175 bits (444), Expect = 5e-44
Identities = 89/166 (53%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
QL + TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR EGI
Sbjct: 377 QLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAAEEGI 436
Query: 181 VVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V+GGG ALLRCIP LD L + D++IG+E++K L+ P TIA NAG+ G ++V+K+++
Sbjct: 437 VLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ 496
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
+GYDA ++V+M GIIDP KVVRTAL DAA ASLL T+
Sbjct: 497 SSSEVGYDAMVGDFVNMVGKGIIDPTKVVRTALLDAAGVASLLTTA 542
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 174 bits (442), Expect = 8e-44
Identities = 90/166 (54%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
+L+ TSNY+RER+ +RL +L GVAV+ +GG SEVEVNE+ DR EGI
Sbjct: 379 ELETATSNYDRERLIDRLGRLQSGVAVLLIGGCSEVEVNEKKDRVNDALNATRAAVEEGI 438
Query: 181 VVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V GGG ALLRCIP LD+L + D++IG+ ++K AL++PC TIA+NAG +G +VV K+
Sbjct: 439 VPGGGAALLRCIPALDLLKPANKDQEIGVSIIKKALRTPCITIASNAGFDGAVVVSKVED 498
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
+ GYDA N+EYV+M E GIIDP KVVR ALTDA+ ASLL T+
Sbjct: 499 MGPEYGYDALNNEYVNMIEKGIIDPTKVVRRALTDASGVASLLTTA 544
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 165 bits (418), Expect = 5e-41
Identities = 86/161 (53%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Frame = +1
Query: 16 TSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGIVVGGG 195
TS+YE+E+++ERL++LS GVA+++VGGSS+VEV+E+ DR EGIV GGG
Sbjct: 382 TSSYEKEKMQERLARLSSGVALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEGIVPGGG 441
Query: 196 LALLRCIPVL-DVLNVSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLKLDGNI 372
ALLRCI L D+ + D+ +G+E+++ AL+ PC TIA NAG++G +VV K+ LDG+
Sbjct: 442 TALLRCIQKLNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEILDGDY 501
Query: 373 GYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
GYDA EY +M E GIIDP KVVRTA++DAA ASLL T+
Sbjct: 502 GYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTA 542
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 164 bits (415), Expect = 1e-40
Identities = 85/166 (51%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 180
Q++ TS YE+E+++ERL++L+ GVA+++VGGSSEVEVNE+ DR EGI
Sbjct: 373 QIEDTTSEYEKEKLQERLARLASGVALLRVGGSSEVEVNEKKDRVHDALNATRAAVEEGI 432
Query: 181 VVGGGLALLRCIPVLD-VLNVSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 357
V GGG ALLRCI L+ V + D+++G+E+++ AL+ PC TIA NAG++G +VV K+
Sbjct: 433 VPGGGTALLRCIEKLEGVETTNEDQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVAKVEN 492
Query: 358 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
G+ GYDA EY ++ E GIIDP KVVRTA+TDA+ ASLL T+
Sbjct: 493 QAGDYGYDALKGEYGNLIEKGIIDPTKVVRTAITDASGVASLLTTA 538
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 575
Score = 160 bits (404), Expect = 2e-39
Identities = 82/166 (49%), Positives = 122/166 (73%), Gaps = 2/166 (1%)
Frame = +1
Query: 4 LQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGIV 183
+++ TS+Y++E+++ERL+KLS GVAV+K+GG+SE EV E+ DR EGIV
Sbjct: 384 IELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIV 443
Query: 184 VGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLKL 360
GGG+ALL LD L+ + D++IG+++++ AL++P +TIA+NAG+ G +VV KLL+
Sbjct: 444 PGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQ 503
Query: 361 DG-NIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
D ++GYDA EYVDM ++GIIDP+KV+RTAL DAA +SL+ T+
Sbjct: 504 DNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTT 549
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial precursor
Length = 587
Score = 159 bits (402), Expect = 3e-39
Identities = 84/161 (52%), Positives = 117/161 (72%), Gaps = 2/161 (1%)
Frame = +1
Query: 19 SNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGIVVGGGL 198
S+Y++E+++ERL+KLS GVAV+K+GG+SE EV E+ DR EGIV GGG+
Sbjct: 392 SDYDKEKLQERLAKLSGGVAVLKIGGASESEVGEKKDRVTDALNATKAAVEEGIVPGGGV 451
Query: 199 ALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLKLDG-NI 372
ALL LD L+ + D +IG+++++ AL++P YTIA+NAG+ G ++V KLL+ D ++
Sbjct: 452 ALLYASKELDKLSTANFDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDL 511
Query: 373 GYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
GYDA EYVDM +SGIIDPVKV+RTAL DAA +SLL T+
Sbjct: 512 GYDAAKGEYVDMVKSGIIDPVKVIRTALVDAASVSSLLTTT 552
>sp|P29197|CH60_ARATH Chaperonin CPN60, mitochondrial precursor (HSP60)
Length = 577
Score = 158 bits (399), Expect = 8e-39
Identities = 81/166 (48%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Frame = +1
Query: 4 LQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGIV 183
+++ TS+Y++E+++ERL+KLS GVAV+K+GG+SE EV E+ DR EGI+
Sbjct: 383 IELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIL 442
Query: 184 VGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLKL 360
GGG+ALL L+ L + D++IG+++++ AL++P YTIA+NAG+ G ++V KLL+
Sbjct: 443 PGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQ 502
Query: 361 DG-NIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAARAASLLITS 495
D ++GYDA EYVDM ++GIIDP+KV+RTAL DAA +SLL T+
Sbjct: 503 DNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTT 548
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.136 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,583,130
Number of Sequences: 369166
Number of extensions: 1074368
Number of successful extensions: 3945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3549
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)