Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K03
(193 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 87 2e-17
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 86 4e-17
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 86 4e-17
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 86 4e-17
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 83 2e-16
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 83 2e-16
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 82 3e-16
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 82 5e-16
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 81 9e-16
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 78 7e-15
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 86.7 bits (213), Expect = 2e-17
Identities = 38/46 (82%), Positives = 43/46 (93%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 85.5 bits (210), Expect = 4e-17
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 85.5 bits (210), Expect = 4e-17
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 85.5 bits (210), Expect = 4e-17
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 83.2 bits (204), Expect = 2e-16
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 135
K Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 86 KSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 82.4 bits (202), Expect = 3e-16
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 86 KPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 81.6 bits (200), Expect = 5e-16
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 86 KQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 80.9 bits (198), Expect = 9e-16
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 85 KAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 77.8 bits (190), Expect = 7e-15
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1
Query: 1 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 138
K ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 86 KPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,777,264
Number of Sequences: 369166
Number of extensions: 337889
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)