Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J23-1
(629 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P83941|ELOC_RAT Transcription elongation factor B polype... 156 5e-38
sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1A (... 35 0.12
sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1A (... 35 0.12
sp|Q59038|YG44_METJA Hypothetical protein MJ1644 31 3.0
sp|P52285|FP21_DICDI Glycoprotein FP21 precursor 30 6.6
>sp|P83941|ELOC_RAT Transcription elongation factor B polypeptide 1 (RNA polymerase II
transcription factor SIII subunit C) (SIII p15) (Elongin
C) (EloC) (Elongin 15 kDa subunit) (Stromal
membrane-associated protein SMAP1B homolog)
sp|P83940|ELOC_MOUSE Transcription elongation factor B polypeptide 1 (RNA polymerase II
transcription factor SIII subunit C) (SIII p15) (Elongin
C) (EloC) (Elongin 15 kDa subunit) (Stromal
membrane-associated protein SMAP1B homolog)
sp|Q15369|ELOC_HUMAN Transcription elongation factor B polypeptide 1 (RNA polymerase II
transcription factor SIII subunit C) (SIII p15) (Elongin
C) (EloC) (Elongin 15 kDa subunit)
Length = 112
Score = 156 bits (394), Expect = 5e-38
Identities = 77/105 (73%), Positives = 80/105 (76%)
Frame = +2
Query: 8 YGSAEGPDAMYVKLISSDGHEFYVKREYALTSGTIKAMLSGPGQFQENETNEVHFRELPS 187
YG EGPDAMYVKLISSDGHEF VKRE+ALTSGTIKAMLSGPGQF ENETNEV+FRE+PS
Sbjct: 8 YGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPS 67
Query: 188 HVLQKVCMYFAYKVRYTNXXXXXXXXXXXXXXXXXXXMAANFLDC 322
HVL KVCMYF YKVRYTN MAANFLDC
Sbjct: 68 HVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated
protein p19) (p19A) (p19skp1)
sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated
protein p19) (p19A) (p19skp1)
Length = 163
Score = 35.4 bits (80), Expect = 0.12
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +2
Query: 41 VKLISSDGHEFYVKREYALTSGTIKAMLSGPGQFQENETNEVHFRELPSHVLQKVCMY 214
+KL SSDG F V E A S TIK ML G E + + V + + +L+KV +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated
protein p19) (p19A) (p19skp1) (RNA polymerase II
elongation factor-like protein) (Organ of Corti protein
2) (OCP-II protein) (OCP-2) (Transcription elongation
factor B) (SIII)
sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated
protein p19) (p19A) (p19skp1)
sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated
protein p19) (p19A) (p19skp1) (Organ of Corti protein 2)
(OCP-II protein) (OCP-2)
Length = 163
Score = 35.4 bits (80), Expect = 0.12
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +2
Query: 41 VKLISSDGHEFYVKREYALTSGTIKAMLSGPGQFQENETNEVHFRELPSHVLQKVCMY 214
+KL SSDG F V E A S TIK ML G E + + V + + +L+KV +
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 61
>sp|Q59038|YG44_METJA Hypothetical protein MJ1644
Length = 177
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 502 YVIDSKIFYVKSKIYGYFV*KSFDKIVIY---ESFSLQAVNYY 621
+++ +FY+ S I GYF+ KS++K+ Y +SF + + Y+
Sbjct: 98 FLVGVILFYILSVIGGYFIKKSYEKVSYYTGVDSFRICGLLYF 140
>sp|P52285|FP21_DICDI Glycoprotein FP21 precursor
Length = 162
Score = 29.6 bits (65), Expect = 6.6
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 41 VKLISSDGHEFYVKREYALTSGTIKAMLSGPGQFQENETNEVHFRELPSHVLQKVCMY 214
VKL SSD F +++E A S TIK M+ G+ + + + S +L+KV Y
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGE----SDSPIPLPNVTSTILEKVLDY 57
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,270,692
Number of Sequences: 369166
Number of extensions: 1091874
Number of successful extensions: 2168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)