Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J20
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 182 7e-46
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 181 1e-45
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 180 3e-45
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 180 3e-45
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 180 3e-45
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 178 8e-45
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 177 2e-44
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 175 7e-44
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 173 3e-43
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 171 1e-42
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 182 bits (461), Expect = 7e-46
Identities = 101/135 (74%), Positives = 107/135 (79%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 21 SAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL 80
Query: 182 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 361
T+ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 81 TDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 140
Query: 362 LGLYGLIVALILSTK 406
LGLYGLIVALILSTK
Sbjct: 141 LGLYGLIVALILSTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 181 bits (459), Expect = 1e-45
Identities = 101/135 (74%), Positives = 108/135 (80%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
+AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 20 AAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL 79
Query: 182 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 361
+ ++ KS IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 80 TEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 139
Query: 362 LGLYGLIVALILSTK 406
LGLYGLIVALILSTK
Sbjct: 140 LGLYGLIVALILSTK 154
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 180 bits (456), Expect = 3e-45
Identities = 100/135 (74%), Positives = 107/135 (79%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
+AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 21 AAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSL 80
Query: 182 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 361
+ ++ KS IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 81 NDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 140
Query: 362 LGLYGLIVALILSTK 406
LGLYGLIVALILSTK
Sbjct: 141 LGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 180 bits (456), Expect = 3e-45
Identities = 99/135 (73%), Positives = 107/135 (79%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
+AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 21 AAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSL 80
Query: 182 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 361
++ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 81 NDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 140
Query: 362 LGLYGLIVALILSTK 406
LGLYGLIVALILSTK
Sbjct: 141 LGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 180 bits (456), Expect = 3e-45
Identities = 99/135 (73%), Positives = 107/135 (79%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
+AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 21 AAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSL 80
Query: 182 GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 361
++ +S IGIVGDAGVRGTAQQPRLFVGMILILIFAEV
Sbjct: 81 NDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV 140
Query: 362 LGLYGLIVALILSTK 406
LGLYGLIVALILSTK
Sbjct: 141 LGLYGLIVALILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 178 bits (452), Expect = 8e-45
Identities = 100/138 (72%), Positives = 107/138 (77%), Gaps = 3/138 (2%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 18 SAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSL 77
Query: 182 ---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIF 352
NYT+ K H IGIVGDAGVRGTAQQPRLFVGMILILIF
Sbjct: 78 DAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIF 137
Query: 353 AEVLGLYGLIVALILSTK 406
AEVLGLYGLIVA+ L TK
Sbjct: 138 AEVLGLYGLIVAIYLYTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 177 bits (449), Expect = 2e-44
Identities = 99/138 (71%), Positives = 107/138 (77%), Gaps = 3/138 (2%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 18 SAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSL 77
Query: 182 ---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIF 352
NYT+ + H IGIVGDAGVRGTAQQPRLFVGMILILIF
Sbjct: 78 DSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIF 137
Query: 353 AEVLGLYGLIVALILSTK 406
AEVLGLYGLIVA+ L TK
Sbjct: 138 AEVLGLYGLIVAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 175 bits (444), Expect = 7e-44
Identities = 98/137 (71%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
+A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 21 AAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSL 80
Query: 182 G--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFA 355
T Y++ K H IGIVGDAGVRGTAQQPRLFVGMILILIFA
Sbjct: 81 DTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA 140
Query: 356 EVLGLYGLIVALILSTK 406
EVLGLYGLIVA+ L TK
Sbjct: 141 EVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 173 bits (438), Expect = 3e-43
Identities = 97/137 (70%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA +
Sbjct: 23 SAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 82
Query: 182 --GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFA 355
+ Y++ + H IGIVGDAGVRGTAQQPRLFVGMILILIFA
Sbjct: 83 EEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA 142
Query: 356 EVLGLYGLIVALILSTK 406
EVLGLYGLIVA+ L TK
Sbjct: 143 EVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 171 bits (433), Expect = 1e-42
Identities = 96/137 (70%), Positives = 105/137 (76%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 SAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI 181
SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVAVLIA ++
Sbjct: 20 SAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKL 79
Query: 182 --GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFA 355
YT+ + H IGIVGDAGVRGTAQQPRL+VGMILILIFA
Sbjct: 80 DEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFA 139
Query: 356 EVLGLYGLIVALILSTK 406
EVLGLYGLIVA+ L TK
Sbjct: 140 EVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,903,119
Number of Sequences: 369166
Number of extensions: 932676
Number of successful extensions: 3133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3054
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)