Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J13
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19746|INX3_CAEEL Innexin-3 35 0.11
sp|P08069|IGF1R_HUMAN Insulin-like growth factor 1 receptor... 32 0.97
sp|P52538|DNBI_HHV6Z Major DNA-binding protein (MDBP) 32 1.7
sp|P91706|DECA_DROSI Decapentaplegic protein precursor (DPP... 31 2.2
sp|P07713|DECA_DROME Decapentaplegic protein precursor (DPP... 31 2.2
sp|P24062|IGF1R_RAT Insulin-like growth factor 1 receptor p... 30 3.7
sp|Q8A469|RPOB_BACTN DNA-directed RNA polymerase beta chain... 30 3.7
sp|Q60751|IGF1R_MOUSE Insulin-like growth factor 1 receptor... 30 3.7
sp|P38132|CDC47_YEAST DNA replication licensing factor CDC4... 30 4.8
sp|P03952|KLKB1_HUMAN Plasma kallikrein precursor (Plasma p... 30 4.8
>sp|Q19746|INX3_CAEEL Innexin-3
Length = 420
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +1
Query: 58 IFILVRQFLKSSKNIYKKIFT*SSTNYHLNSMEPGPV-NVVDNTHFQMDFVDRIYLNDWP 234
+F+L+ F+ + IY+ F S NY + S+ GPV N D F + D
Sbjct: 287 VFVLITTFINTLCTIYRLSFDSSRHNY-IRSLLSGPVNNFKDEKAMIASFANNGLKQDGV 345
Query: 235 LVILKEWIENLVDENDPNLICAEVCEAIYNRYRINQRISKD 357
L++ +D++ ++ E+CE ++ ++ N + ++D
Sbjct: 346 LLM------RFIDDHAGAMVTKEICEELFKKHGENLQHNRD 380
>sp|P08069|IGF1R_HUMAN Insulin-like growth factor 1 receptor precursor (Insulin-like
growth factor I receptor) (CD221 antigen) [Contains:
Insulin-like growth factor 1 receptor alpha chain;
Insulin-like growth factor 1 receptor beta chain]
Length = 1367
Score = 32.3 bits (72), Expect = 0.97
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Frame = +1
Query: 136 YHLNSMEPGPVNVVDNTHFQMDFVDRIYLN--DWPLVILKEWIENLVDENDPNLICAEVC 309
Y+L ++ G + + N D YL+ DW L IL N + N P C ++C
Sbjct: 131 YNLRNITRGAIRIEKNA-------DLCYLSTVDWSL-ILDAVSNNYIVGNKPPKECGDLC 182
Query: 310 EAIYNRYRINQRISKDRFREILSENTKCGGKLCKNTCGGKCATSGN 447
+ ++ + + T K+C +TCG + T N
Sbjct: 183 PGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENN 228
>sp|P52538|DNBI_HHV6Z Major DNA-binding protein (MDBP)
Length = 1132
Score = 31.6 bits (70), Expect = 1.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +1
Query: 316 IYNRYRINQRISKDRFREILSENTKCGGKLCKNTCGGKCATS--GNFK-----RIPALER 474
++N R++ + + + EI + C LC+ C GKC S G R+PA+ +
Sbjct: 434 VWNLNRMSVYNAGNAYTEIYNHLVNCSANLCE-FCDGKCCQSCIGTAMVRVGTRLPAIPK 492
Query: 475 YANFEPLKPEILKHYFFKLSDLTS 546
EPL + Y+ ++ L S
Sbjct: 493 NVKKEPLVMSMFSRYYAEVDILGS 516
>sp|P91706|DECA_DROSI Decapentaplegic protein precursor (DPP-C protein)
Length = 593
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 142 LNSMEPGPVNVVDNTHFQMDFVDRIYLNDWPLVILKEWIENLV 270
+N+M PG V Q+D V +YLND V+LK + E V
Sbjct: 545 VNNMNPGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTV 587
>sp|P07713|DECA_DROME Decapentaplegic protein precursor (DPP-C protein)
Length = 588
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 142 LNSMEPGPVNVVDNTHFQMDFVDRIYLNDWPLVILKEWIENLV 270
+N+M PG V Q+D V +YLND V+LK + E V
Sbjct: 540 VNNMNPGKVPKACCVPTQLDSVAMLYLNDQSTVVLKNYQEMTV 582
>sp|P24062|IGF1R_RAT Insulin-like growth factor 1 receptor precursor (Insulin-like
growth factor I receptor) [Contains: Insulin-like growth
factor 1 receptor alpha chain; Insulin-like growth
factor 1 receptor beta chain]
Length = 1370
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Frame = +1
Query: 136 YHLNSMEPGPVNVVDNTHFQMDFVDRIYLN--DWPLVILKEWIENLVDENDPNLICAEVC 309
Y+L ++ G + + N D YL+ DW L IL N + N P C ++C
Sbjct: 131 YNLRNITRGAIRIEKNA-------DLCYLSTIDWSL-ILDAVSNNYIVGNKPPKECGDLC 182
Query: 310 EAIYNRYRINQRISKDRFREILSENTKCGGKLCKNTCGGKCATSGN 447
+ ++ + + T K+C + CG + T N
Sbjct: 183 PGTLEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSVCGKRACTENN 228
>sp|Q8A469|RPOB_BACTN DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1270
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 241 ILKEWIENLVDENDPNLICAEVCEAIYNRYRINQRISKDRFRE 369
+LK WIE+ VDE+ ++ E E I +R + + + D E
Sbjct: 245 VLKTWIEDFVDEDTGEVVSIERNEVIIDRETVLEEVHIDEILE 287
>sp|Q60751|IGF1R_MOUSE Insulin-like growth factor 1 receptor precursor (Insulin-like
growth factor I receptor) [Contains: Insulin-like growth
factor 1 receptor alpha chain; Insulin-like growth
factor 1 receptor beta chain]
Length = 1373
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Frame = +1
Query: 136 YHLNSMEPGPVNVVDNTHFQMDFVDRIYLN--DWPLVILKEWIENLVDENDPNLICAEVC 309
Y+L ++ G + + N D YL+ DW L IL N + N P C ++C
Sbjct: 131 YNLRNITRGAIRIEKNA-------DLCYLSTIDWSL-ILDAVSNNYIVGNKPPKECGDLC 182
Query: 310 EAIYNRYRINQRISKDRFREILSENTKCGGKLCKNTCGGKCATSGN 447
+ ++ + + T K+C + CG + T N
Sbjct: 183 PGTLEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSVCGKRACTENN 228
>sp|P38132|CDC47_YEAST DNA replication licensing factor CDC47 (Cell division control
protein 47)
Length = 845
Score = 30.0 bits (66), Expect = 4.8
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +1
Query: 301 EVCEAIYNRYRI-NQRISKDRFREILSENTKCGGKLCKNTCGGKCATSGNFKRIPALERY 477
+V + I N+ R+ N+R+ DR EI SEN L T + + + + E
Sbjct: 137 DVLDVILNQRRLRNERMLSDRTNEIRSEN------LMDTTMDPPSSMNDALREVVEDET- 189
Query: 478 ANFEPLKPEILKHYFFKLSDLTSGCIKRNR 567
E P + + YF L+ C +R R
Sbjct: 190 ---ELFPPNLTRRYFLYFKPLSQNCARRYR 216
>sp|P03952|KLKB1_HUMAN Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin)
(Fletcher factor) [Contains: Plasma kallikrein heavy
chain; Plasma kallikrein light chain]
Length = 638
Score = 30.0 bits (66), Expect = 4.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 217 YLNDWPLVILKEWIENLVDENDPNLICAEVCEAIYNRYRINQRISKDRFREILSENTKCG 396
++ W K I+N++ + + L+ E C+ Y Y+I QR+ ++E G
Sbjct: 518 WVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE--------G 569
Query: 397 GK-LCKNTCGGKCATSGN 447
GK CK GG N
Sbjct: 570 GKDACKGDSGGPLVCKHN 587
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,599,039
Number of Sequences: 369166
Number of extensions: 1432816
Number of successful extensions: 3006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)