Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J03
(440 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 197 1e-50
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 196 2e-50
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 195 3e-50
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 193 1e-49
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 193 2e-49
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 191 5e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 191 8e-49
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 191 8e-49
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 191 8e-49
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 189 2e-48
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 197 bits (500), Expect = 1e-50
Identities = 108/148 (72%), Positives = 115/148 (77%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 5 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 64
Query: 181 YGLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQ 351
YGLVVAVLIA + NYT+ K H IGIVGDAGVRGTAQQ
Sbjct: 65 YGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 124
Query: 352 PRLFVGMILILIFAEVLGLYGLIVALIL 435
PRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 125 PRLFVGMILILIFAEVLGLYGLIVAIYL 152
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 196 bits (497), Expect = 2e-50
Identities = 107/148 (72%), Positives = 115/148 (77%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 5 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 64
Query: 181 YGLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQ 351
YGLVVAVLIA + NYT+ + H IGIVGDAGVRGTAQQ
Sbjct: 65 YGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 124
Query: 352 PRLFVGMILILIFAEVLGLYGLIVALIL 435
PRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 125 PRLFVGMILILIFAEVLGLYGLIVAIYL 152
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 195 bits (496), Expect = 3e-50
Identities = 107/146 (73%), Positives = 115/146 (78%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P Y+ FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 8 PEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 67
Query: 181 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 360
YGLVVAVLIA + T+ +S IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 361 FVGMILILIFAEVLGLYGLIVALILS 438
FVGMILILIFAEVLGLYGLIVALILS
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILS 153
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 193 bits (491), Expect = 1e-49
Identities = 105/147 (71%), Positives = 115/147 (78%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P+Y PFFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 8 PVYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 67
Query: 181 YGLVVAVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 354
YGLVVAVLIA + T Y++ K H IGIVGDAGVRGTAQQP
Sbjct: 68 YGLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQP 127
Query: 355 RLFVGMILILIFAEVLGLYGLIVALIL 435
RLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 128 RLFVGMILILIFAEVLGLYGLIVAIYL 154
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 193 bits (490), Expect = 2e-49
Identities = 106/146 (72%), Positives = 116/146 (79%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P Y+ FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 7 PEYSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 66
Query: 181 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 360
YGLVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRL
Sbjct: 67 YGLVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 126
Query: 361 FVGMILILIFAEVLGLYGLIVALILS 438
FVGMILILIFAEVLGLYGLIVALILS
Sbjct: 127 FVGMILILIFAEVLGLYGLIVALILS 152
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 191 bits (486), Expect = 5e-49
Identities = 105/147 (71%), Positives = 115/147 (78%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 10 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 69
Query: 181 YGLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 354
YGLVVAVLIA + + Y++ + H IGIVGDAGVRGTAQQP
Sbjct: 70 YGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 129
Query: 355 RLFVGMILILIFAEVLGLYGLIVALIL 435
RLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 130 RLFVGMILILIFAEVLGLYGLIVAIYL 156
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 8e-49
Identities = 105/146 (71%), Positives = 113/146 (77%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAI
Sbjct: 8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAI 67
Query: 181 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 360
YGLVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 361 FVGMILILIFAEVLGLYGLIVALILS 438
FVGMILILIFAEVLGLYGLIVALILS
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILS 153
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 8e-49
Identities = 104/146 (71%), Positives = 113/146 (77%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAI
Sbjct: 8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAI 67
Query: 181 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 360
YGLVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 361 FVGMILILIFAEVLGLYGLIVALILS 438
FVGMILILIFAEVLGLYGLIVALILS
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILS 153
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 8e-49
Identities = 104/146 (71%), Positives = 113/146 (77%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAI
Sbjct: 8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAI 67
Query: 181 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 360
YGLVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 361 FVGMILILIFAEVLGLYGLIVALILS 438
FVGMILILIFAEVLGLYGLIVALILS
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILS 153
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 189 bits (481), Expect = 2e-48
Identities = 103/147 (70%), Positives = 114/147 (77%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 180
P+Y+PFFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAI
Sbjct: 7 PMYSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAI 66
Query: 181 YGLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 354
YGLVVAVLIA ++ YT+ + H IGIVGDAGVRGTAQQP
Sbjct: 67 YGLVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP 126
Query: 355 RLFVGMILILIFAEVLGLYGLIVALIL 435
RL+VGMILILIFAEVLGLYGLIVA+ L
Sbjct: 127 RLYVGMILILIFAEVLGLYGLIVAIFL 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,754,533
Number of Sequences: 369166
Number of extensions: 799963
Number of successful extensions: 3427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)