Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J02
(803 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57057|GLPT_HUMAN Glycerol-3-phosphate transporter (G-3-... 110 3e-24
sp|P13408|UHPT_ECOLI Hexose phosphate transport protein 60 5e-09
sp|Q9PJJ8|UHPT_CHLMU Probable hexose phosphate transport pr... 55 2e-07
sp|P27670|UHPT_SALTY Hexose phosphate transport protein 54 4e-07
sp|O84548|UHPT_CHLTR Probable hexose phosphate transport pr... 52 2e-06
sp|Q9Z7N9|UHPT_CHLPN Probable hexose phosphate transport pr... 50 9e-06
sp|P27669|UHPC_SALTY Regulatory protein uhpC 49 2e-05
sp|P37948|GLPT_BACSU Glycerol-3-phosphate transporter (G-3-... 43 9e-04
sp|P12681|PGTP_SALTY Phosphoglycerate transporter protein 41 0.003
sp|Q8DH61|SYL_SYNEL Leucyl-tRNA synthetase (Leucine--tRNA l... 39 0.022
>sp|P57057|GLPT_HUMAN Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease)
(Solute carrier family 37 member 1)
Length = 533
Score = 110 bits (276), Expect = 3e-24
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 36/298 (12%)
Frame = +2
Query: 14 FYGAFYALNGLFQSTGWPATLTIMSNWFGHSR-GFWLGLWSGCACVGNIIGDLLTSSVLV 190
FY +NGL Q+TGWP+ +T + NWFG R G +G+W+ VGNI+G L+ +
Sbjct: 157 FYVVTQVINGLVQTTGWPSVVTCLGNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVS 216
Query: 191 YGYEYGFLVPAXXXXXXXXXXXXXXXXKPESLGSKAN------------------RSVLI 316
+ F+VP P + + + +L
Sbjct: 217 TCWGLSFVVPGAIVAAMGIVCFLFLIEHPNDVRCSSTLVTHSKGYENGTNRLRLQKQILK 276
Query: 317 QDINEDDFSECNSVIVENFHKKVE----------------YISLWKIILIPGVIPYSLAY 448
+ N+ E +++ + + IS + IPGVI +SL
Sbjct: 277 SEKNKPLDPEMQCLLLSDGKGSIHPNHVVILPGDGGSGTAAISFTGALKIPGVIEFSLCL 336
Query: 449 ACLKLVNYAFFFWLADYLSNNFKWSNAEADQISIWYDXXXXXXXXXXXXXSDLMWSRSPI 628
KLV+Y F FWL Y++N +A ++S +D SD + R+
Sbjct: 337 LFAKLVSYTFLFWLPLYITNVDHLDAKKAGELSTLFDVGGIFGGILAGVISDRLEKRAST 396
Query: 629 TVLSLILTIPALFVFKNAPNSKLMNSI-YLTIAGVVIGGPATLISSAISADLGSEPLL 799
L L+L P L++F L +I L ++G ++ GP TLI++A+SADLG+ L
Sbjct: 397 CGLMLLLAAPTLYIFSTISKMGLEATIAMLLLSGALVSGPYTLITTAVSADLGTHKSL 454
>sp|P13408|UHPT_ECOLI Hexose phosphate transport protein
Length = 463
Score = 60.5 bits (145), Expect = 5e-09
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Frame = +2
Query: 23 AFYALNGLFQSTGWPATLTIMSNWF-GHSRGFWLGLWSGCACVGNIIGDLLTSSVLVYGY 199
AFYAL+G FQSTG + + ++ W RG +LG W+ + + +G + V ++G
Sbjct: 128 AFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWN----ISHNLGGAGAAGVALFGA 183
Query: 200 EY--------GFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNS 355
Y F+ P+ PES G + ++I+E+D E S
Sbjct: 184 NYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPESYGLGKAEELFGEEISEED-KETES 242
Query: 356 VIVENFHKKVEYISLWKIILIPGVIPYSLAYACLKLVNYAFFFWLADYLSNNFKWSNAEA 535
+ + VEY+ K+I + A L +V W Y K S A A
Sbjct: 243 TDMTKWQIFVEYVLKNKVIWL-----LCFANIFLYVVRIGIDQWSTVYAFQELKLSKAVA 297
Query: 536 DQISIWYDXXXXXXXXXXXXXSDLM-WSRSPITVLSLILTIPALFVFKNAPNSKLMNSIY 712
Q ++ SDL R + ++L L I L V+++A N + +
Sbjct: 298 IQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIALALIIATLGVYQHASNEYIYLASL 357
Query: 713 LTIAGVVIGGPATLISSA 766
+ G ++ GP LI A
Sbjct: 358 FAL-GFLVFGPQLLIGVA 374
>sp|Q9PJJ8|UHPT_CHLMU Probable hexose phosphate transport protein
Length = 456
Score = 55.1 bits (131), Expect = 2e-07
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 9/256 (3%)
Frame = +2
Query: 26 FYALNGLFQSTGWPATLTIMSNWFGHS-RGFWLGLWSGCACVGNIIGDLLTSSVLVY-GY 199
F+ +NG FQ GWP ++++W+ S RG W +WS +G + +LT + Y G+
Sbjct: 127 FWGINGWFQGWGWPPCARLLTHWYSKSERGTWWSVWSTSHNIGGALIPVLTGIAIDYAGW 186
Query: 200 EYGFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNSVIVENFHK 379
+P P+SLG A +D++ ++ E +
Sbjct: 187 RGAMFIPGIICIIMGFILIDRLRDTPQSLGLPAIEKFKKEDLSHPHEETTADILEEEAER 246
Query: 380 KVEYISLWKIILIPGVIPYSLAYAC--LKLVNYAFFFWLADYLSNNFKWSNAEADQISIW 553
++ + ++ + L++A + +V A W A YL +S +A+
Sbjct: 247 ELSTKEILFTYVLSNKWLWFLSFASFFIYVVRMAVNDWSALYLIETKNYSTVKANLCVSL 306
Query: 554 YDXXXXXXXXXXXXXSDLM--WSRSPITV---LSLILTIPALFVFKNAPNSKLMNSIYLT 718
++ SD + R P+ V L L+ +I L+ + + + +L
Sbjct: 307 FEIGGLFGMLLAGWLSDTISKGKRGPMNVVFSLGLLFSILGLWGTHDR-SIWWADGAFLF 365
Query: 719 IAGVVIGGPATLISSA 766
I G + GP +I A
Sbjct: 366 IIGFFLFGPQMMIGLA 381
>sp|P27670|UHPT_SALTY Hexose phosphate transport protein
Length = 463
Score = 54.3 bits (129), Expect = 4e-07
Identities = 61/258 (23%), Positives = 102/258 (39%), Gaps = 10/258 (3%)
Frame = +2
Query: 23 AFYALNGLFQSTGWPATLTIMSNWF-GHSRGFWLGLWSGCACVGNIIGDLLTSSVLVYGY 199
AFYAL+G FQSTG + + ++ W RG +LG W+ + + +G + V ++G
Sbjct: 128 AFYALSGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWN----ISHNLGGAGAAGVALFGA 183
Query: 200 EY--------GFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNS 355
Y F+ P+ PES G + ++I+E+D E
Sbjct: 184 NYLFDGHVIGMFIFPSIIALIVGFIGLRFGSDSPESYGLGKAEELFGEEISEED-KETEE 242
Query: 356 VIVENFHKKVEYISLWKIILIPGVIPYSLAYACLKLVNYAFFFWLADYLSNNFKWSNAEA 535
+ + VEY+ K+I + + L +V W Y K S A
Sbjct: 243 NEMTKWQIFVEYVLKNKVIWL-----LCFSNIFLYVVRIGIDQWSTVYAFQELKLSKEVA 297
Query: 536 DQISIWYDXXXXXXXXXXXXXSDLM-WSRSPITVLSLILTIPALFVFKNAPNSKLMNSIY 712
Q ++ SDL R+ + ++L L I L V+++A N + +
Sbjct: 298 IQGFTLFEVGALVGTLLWGWLSDLANGRRALVACVALALIIATLGVYQHASNQYVYLASL 357
Query: 713 LTIAGVVIGGPATLISSA 766
+ G ++ GP LI A
Sbjct: 358 FAL-GFLVFGPQLLIGVA 374
>sp|O84548|UHPT_CHLTR Probable hexose phosphate transport protein
Length = 456
Score = 51.6 bits (122), Expect = 2e-06
Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 17/264 (6%)
Frame = +2
Query: 26 FYALNGLFQSTGWPATLTIMSNWFGHS-RGFWLGLWSGCACVGNIIGDLLTSSVLVY-GY 199
F+ +NG FQ GWP ++++W+ S RG W +WS +G + +LT + Y G+
Sbjct: 127 FWGINGWFQGWGWPPCARLLTHWYSKSERGTWWSVWSTSHNIGGALIPVLTGVAIDYTGW 186
Query: 200 EYGFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNSVIVENFHK 379
+P P+SLG A + + E+D + +
Sbjct: 187 RGAMFIPGIICIIMGFILIDRLRDTPQSLGLPA----IEKFRKEEDAHPHEETTADILEE 242
Query: 380 KVEYISLWKIILIPGVIPYSLAYACLKLVNYAFFF----------WLADYLSNNFKWSNA 529
+ E K IL Y L+ L +++A FF W A YL +S
Sbjct: 243 EAERELSTKEIL----FTYVLSNKWLWFLSFASFFIYVVRMAVNDWSALYLIETKDYSTV 298
Query: 530 EADQISIWYDXXXXXXXXXXXXXSDLM--WSRSPITV---LSLILTIPALFVFKNAPNSK 694
+A+ ++ SD + R P+ V L L+++I L+ ++
Sbjct: 299 KANLCVSLFEIGGLFGMLLAGWLSDTISKGKRGPMNVVFSLGLLVSILGLWGTRDY-FVW 357
Query: 695 LMNSIYLTIAGVVIGGPATLISSA 766
++ +L I G + GP +I A
Sbjct: 358 WIDGTFLFIIGFFLFGPQMMIGLA 381
>sp|Q9Z7N9|UHPT_CHLPN Probable hexose phosphate transport protein
Length = 455
Score = 49.7 bits (117), Expect = 9e-06
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +2
Query: 17 YGAFYALNGLFQSTGWPATLTIMSNWFGHS-RGFWLGLWSGCACVGNIIGDLLTSSVLVY 193
+ ++ LNG FQ GWP ++++W+ S RG W +WS +G + +LT ++ Y
Sbjct: 124 FALWWGLNGWFQGWGWPPCARLLTHWYAKSERGTWWSVWSTSHNIGGALIPILTGFIIDY 183
Query: 194 -GYEYGFLVPAXXXXXXXXXXXXXXXXKPESLG 289
G+ VP P+SLG
Sbjct: 184 SGWRGAMYVPGILCIGMGLVLINRLRDTPQSLG 216
>sp|P27669|UHPC_SALTY Regulatory protein uhpC
Length = 442
Score = 48.9 bits (115), Expect = 2e-05
Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 7/257 (2%)
Frame = +2
Query: 17 YGAFYALNGLFQSTGWPATLTIMSNWFGHS-RGFWLGLWSGCACVGNIIGDLLTSSV-LV 190
+ +ALN FQ G P +++ W+ + RG W LW+ VG + L+ ++V L
Sbjct: 121 FALLWALNAFFQGFGSPVCARLLTAWYSRTERGGWWALWNTAHNVGGALIPLVMAAVALH 180
Query: 191 YGYEYGFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNSVIVEN 370
YG+ G +V +P+++G + D D
Sbjct: 181 YGWRVGMMVAGLLAIGVGMVLCWRLRDRPQAIGLPP-----VGDWRHDALEVAQQQEGAG 235
Query: 371 FHKKVEYISLWKIILIPGVIPYSLAYACLKLVNYAFFFWLADYLSNNFKWSNAEADQISI 550
+K E ++ + ++L P + SL Y + +V A W Y+S A+
Sbjct: 236 LSRK-EILAKY-VLLNPYIWLLSLCYVLVYVVRAAINDWGNLYMSETLGVDLVTANTAVS 293
Query: 551 WYDXXXXXXXXXXXXXSDLMW--SRSPITVL---SLILTIPALFVFKNAPNSKLMNSIYL 715
++ SD ++ +R P+ ++ ++L++ +L++ A S +M +
Sbjct: 294 MFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA--SYVMQAACF 351
Query: 716 TIAGVVIGGPATLISSA 766
G + GP LI A
Sbjct: 352 FTTGFFVFGPQMLIGMA 368
>sp|P37948|GLPT_BACSU Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P
permease)
Length = 444
Score = 43.1 bits (100), Expect = 9e-04
Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 8/252 (3%)
Frame = +2
Query: 26 FYALNGLFQSTGWPATLTIMSNWFGHS-RGFWLGLWSGCACV-GNIIGDLLTSSVLVY-G 196
F +NG FQ GWP M++WF S RG + +W+ + G I+ L+T + ++
Sbjct: 126 FMFINGWFQGMGWPPCGRTMAHWFSISERGTKMSIWNVAHNIGGGILAPLVTLGIAMFVT 185
Query: 197 YEYGFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECNSVIVENFH 376
++ F PA P+S G I++ D +N
Sbjct: 186 WKSVFFFPAIIAIIISFLIVLLVRDTPQSCGLPP-----IEEYRNDYPKHA----FKNQE 236
Query: 377 KKVEYISLWKIILIPGVIPYSLAYA--CLKLVNYAFFFWLADYLSNNFKWSNAEADQISI 550
K++ + ++ + +A+A + V Y W YL+ +S ++
Sbjct: 237 KELTTKEILFQYVLNNKFLWYIAFANVFVYFVRYGVVDWAPTYLTEAKGFSPEDSRWSYF 296
Query: 551 WYDXXXXXXXXXXXXXSDLMWS--RSPITVLSLI-LTIPALFVFKNAPNSKLMNSIYLTI 721
Y+ SD + R+P VL + + I L + N + L+++I L
Sbjct: 297 LYEYAGIPGTILCGWISDRFFKSRRAPAGVLFMAGVFIAVLVYWLNPAGNPLVDNIALIS 356
Query: 722 AGVVIGGPATLI 757
G +I GP LI
Sbjct: 357 IGFLIYGPVMLI 368
>sp|P12681|PGTP_SALTY Phosphoglycerate transporter protein
Length = 463
Score = 41.2 bits (95), Expect = 0.003
Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 13/263 (4%)
Frame = +2
Query: 11 YFYGAFYALNGLFQSTGWPATLTIMSNWF-GHSRGFWLGLWSGCACV-GNIIGDLLTSSV 184
+ + A NGLFQ G + ++NWF RG W+ V G I+ ++ ++
Sbjct: 118 WIFAALVVFNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNISHNVGGGIVAPIVGAAF 177
Query: 185 LVYGYEY----GFLVPAXXXXXXXXXXXXXXXXKPESLGSKANRSVLIQDINEDDFSECN 352
+ G E+ ++VPA P G + ++ + E
Sbjct: 178 AILGSEHWQSASYIVPACVAVIFALIVLVLGKGSPRKEGLPSLEQMMPE--------EKV 229
Query: 353 SVIVENFHKKVEYISLWKIILI-----PGVIPYSLAYACLKLVNYAFFFWLADYLSNNFK 517
+ +N K E +S W+I SL + +V + WL YL
Sbjct: 230 VLKTKNTAKAPENMSAWQIFCTYVLRNKNAWYISLVDVFVYMVRFGMISWLPIYLLTVKH 289
Query: 518 WSNAEADQISIWYDXXXXXXXXXXXXXSDLMWS--RSPITVLSLILTIPALFVFKNAPNS 691
+S + ++++ SD ++ R P+ ++ + L L + + S
Sbjct: 290 FSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMALIFVCLIGYWKS-ES 348
Query: 692 KLMNSIYLTIAGVVIGGPATLIS 760
LM +I+ I G +I P L S
Sbjct: 349 LLMVTIFAAIVGCLIYVPQFLAS 371
>sp|Q8DH61|SYL_SYNEL Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 857
Score = 38.5 bits (88), Expect = 0.022
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 35 LNGLFQSTGWPATLTIM-SNWFGHSRGFWLGLWSGCACVGN--IIGDLLTSSVLVYGYEY 205
LN L Q TGWP + +M +NW G SRG +L VG+ IG T VYG Y
Sbjct: 204 LNDLEQLTGWPERVKLMQANWIGQSRGAYLEF----PIVGSDEKIGVFTTRPDTVYGVTY 259
Query: 206 GFLVP 220
L P
Sbjct: 260 VVLAP 264
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,463,614
Number of Sequences: 369166
Number of extensions: 1769676
Number of successful extensions: 4883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4874
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)