Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I24
(611 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor... 161 1e-39
sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing... 160 2e-39
sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing... 160 2e-39
sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing p... 160 2e-39
sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing... 160 2e-39
sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing... 160 2e-39
sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing... 160 3e-39
sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing... 158 9e-39
sp|P54837|ERV25_YEAST Protein ERV25 precursor 109 5e-24
sp|Q8R1V4|TMED4_MOUSE Transmembrane emp24 domain containing... 77 5e-14
>sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 161 bits (407), Expect = 1e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 160 bits (406), Expect = 2e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (p24delta) (S31III125) (S31I125)
(Tmp-21-I)
Length = 219
Score = 160 bits (406), Expect = 2e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 160 bits (406), Expect = 2e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 160 bits (406), Expect = 2e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 160 bits (406), Expect = 2e-39
Identities = 76/107 (71%), Positives = 91/107 (85%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 160 bits (404), Expect = 3e-39
Identities = 76/107 (71%), Positives = 90/107 (84%)
Frame = +1
Query: 13 GGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDRE 192
G G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM RE
Sbjct: 113 GTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKRE 172
Query: 193 EKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
E+MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 173 EEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (S31III125)
Length = 213
Score = 158 bits (400), Expect = 9e-39
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = +1
Query: 19 GKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEK 198
G+ PD+ V LD+KHGVE KNY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+
Sbjct: 109 GRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEE 168
Query: 199 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 333
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 169 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 213
>sp|P54837|ERV25_YEAST Protein ERV25 precursor
Length = 211
Score = 109 bits (273), Expect = 5e-24
Identities = 49/104 (47%), Positives = 77/104 (74%)
Frame = +1
Query: 19 GKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEK 198
G+ R + LDI+ G E ++++ ++ EKLKP+EVEL+R+E+++DEIV + Y+++REE+
Sbjct: 108 GRSLSRAIELDIESGAEARDWNKISANEKLKPIEVELRRVEEITDEIVDELTYLKNREER 167
Query: 199 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLI 330
+RDTNEST+ RV FS+ + L L +WQV YL+ YFK+K +I
Sbjct: 168 LRDTNESTNRRVRNFSILVIIVLSSLGVWQVNYLKNYFKTKHII 211
>sp|Q8R1V4|TMED4_MOUSE Transmembrane emp24 domain containing protein 4 precursor (p26)
Length = 227
Score = 76.6 bits (187), Expect = 5e-14
Identities = 41/108 (37%), Positives = 65/108 (60%)
Frame = +1
Query: 7 LMGGGKGPDREVFLDIKHGVETKNYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRD 186
L GGK V LDI+ G NY +A +KL L++ ++L D ++I K+ Y R
Sbjct: 123 LFAGGK---LRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 179
Query: 187 REEKMRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLI 330
REE+ R T+EST+ RV ++S+ L+ IWQ+ +L+ +F++KKL+
Sbjct: 180 REERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,447,728
Number of Sequences: 369166
Number of extensions: 1133563
Number of successful extensions: 3969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3957
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)