Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I06
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30319|DPOL_CBEPV DNA polymerase 31 4.0
sp|P12379|M24_STRPY M protein, serotype 24 precursor 31 4.0
sp|Q8IUD2|RB6I2_HUMAN RAB6 interacting protein 2 (ERC prote... 30 6.9
sp|Q8IYE1|CCDCD_HUMAN Coiled-coil domain-containing protein 13 30 6.9
sp|Q99MI1|RB6I2_MOUSE Rab6 interacting protein 2 (ERC prote... 30 9.0
sp|Q09231|YQ21_CAEEL Hypothetical protein C09F5.1 in chromo... 30 9.0
sp|P18752|ZO72_XENLA Oocyte zinc finger protein XLCOF7.2 30 9.0
>sp|P30319|DPOL_CBEPV DNA polymerase
Length = 964
Score = 31.2 bits (69), Expect = 4.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 748 KLLIRKVRYLEEKLELNEINSQNCSNNLITMYIDNTDV 861
K L+ K RY++ L LNE N+ + +IT Y N DV
Sbjct: 706 KNLVDKSRYIDNNLYLNEQNNPFSNEPVITRYSGNLDV 743
>sp|P12379|M24_STRPY M protein, serotype 24 precursor
Length = 539
Score = 31.2 bits (69), Expect = 4.0
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +1
Query: 679 ENKILNTNLEELKHDIEIYRNENKLLIRKVRYLEEKLELNEINSQNCSNNL 831
++++LN N + L+ D++ R K L + + LEE+ +++E + Q+ +L
Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353
>sp|Q8IUD2|RB6I2_HUMAN RAB6 interacting protein 2 (ERC protein 1)
Length = 1116
Score = 30.4 bits (67), Expect = 6.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 652 EEQIKCVICENKILNTNLEELKHDIEIYRNENKLLIRKVRYLEEKLELNE 801
EE+I+ + + EE +E+YR+ +K + KV L+E+L E
Sbjct: 402 EEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKE 451
>sp|Q8IYE1|CCDCD_HUMAN Coiled-coil domain-containing protein 13
Length = 715
Score = 30.4 bits (67), Expect = 6.9
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 652 EEQIKCVICENKILNTNLEELKHDIEIYRNENKLLIRKVRYLEEKL 789
+E ++ + E +L LEELK E R+ NKLL +++ L+ ++
Sbjct: 325 QEGLEKLASERDVLQRELEELKKKFEGMRSRNKLLSSEMKTLKSQM 370
>sp|Q99MI1|RB6I2_MOUSE Rab6 interacting protein 2 (ERC protein 1) (ERC1) (CAZ-associated
structural protein 2) (CAST2)
Length = 1120
Score = 30.0 bits (66), Expect = 9.0
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 652 EEQIKCVICENKILNTNLEELKHDIEIYRNENKLLIRKVRYLEEKLELNEINSQ 813
EE+I+ + + + EE +E+YR+ +K + KV L+E+L + +
Sbjct: 402 EEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGE 455
>sp|Q09231|YQ21_CAEEL Hypothetical protein C09F5.1 in chromosome III
Length = 571
Score = 30.0 bits (66), Expect = 9.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 166 EKTPK*LINLCCILYPLAFILKLYFVLF 83
E TP+ L +LCCIL L +L L F++F
Sbjct: 278 EYTPELLRSLCCILLLLLLLLFLMFIIF 305
>sp|P18752|ZO72_XENLA Oocyte zinc finger protein XLCOF7.2
Length = 391
Score = 30.0 bits (66), Expect = 9.0
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 733 YRNENKLLIRKVRYL--EEKLELNEINSQNCSNNLITMYIDNTDV---ILYSSLF 882
YR N LL + EE EIN NCS N +T I TD I+ SLF
Sbjct: 157 YRMNNSLLENYISNAIKEETASCEEINQSNCSINPLTEQIQGTDTPTPIMGYSLF 211
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,734,829
Number of Sequences: 369166
Number of extensions: 1442309
Number of successful extensions: 3926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)