Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I05
(216 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate delta-isomeras... 28 6.5
sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate delta-isomeras... 28 6.5
sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate delta-isomeras... 28 6.5
sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate delta-isomeras... 28 8.5
sp|P39523|YM11_YEAST Hypothetical 105.9 kDa protein in RPL1... 28 8.5
sp|Q17232|OAR_BOMMO Octopamine receptor 28 8.5
sp|Q51506|SOXR_PSEAE Redox-sensitive transcriptional activa... 28 8.5
sp|P36124|SET3_YEAST SET domain protein 3 28 8.5
sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate delta-isomeras... 28 8.5
sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate delta-isomeras... 28 8.5
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate delta-isomerase I (IPP isomerase I)
(Isopentenyl pyrophosphate isomerase I)
Length = 287
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 199 KWGE---HELDYLLFIIRDV 215
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate delta-isomerase I (IPP isomerase I)
(Isopentenyl pyrophosphate isomerase I)
Length = 233
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 145 KWGE---HEVDYLLFIVRDV 161
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
Length = 309
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 220 KWGE---HELDYLLFIIRDV 236
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
Length = 284
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 196 KWGE---HELDYLLFIVRDV 212
>sp|P39523|YM11_YEAST Hypothetical 105.9 kDa protein in RPL15B-GCR3 intergenic region
Length = 943
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +2
Query: 26 PIKFSRRKHPVKRRSYSQSH---------VYNSHSIEIPILSKQNSLECLNNSYDNYNSK 178
PI+ ++ + ++YSQ N H EIP++ + L+N+ DN N K
Sbjct: 76 PIQAPLQQRQIPMQNYSQQQRQQQQYNFEYSNPHMNEIPLMQHNFTKPSLSNNRDNVNGK 135
Query: 179 ES 184
++
Sbjct: 136 KA 137
>sp|Q17232|OAR_BOMMO Octopamine receptor
Length = 479
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 23 RPIKFSRRKHPVKRRSYSQSHVYNSHSIEIPILSKQNSLECLNNSYDNYNSKESKIS 193
R K + +K P KRR +S+ ++ I IPILS +NS+ + + +N N+ S
Sbjct: 301 RTRKLTPKKKP-KRRYWSKDDKSHNKLI-IPILSNENSVTDIGENLENRNTSSESNS 355
>sp|Q51506|SOXR_PSEAE Redox-sensitive transcriptional activator soxR
Length = 156
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 125 WIKLEFQWNESYKHEIDYMIFVLRDVFDGKI 33
W +L QW E ID ++ +LRD DG I
Sbjct: 89 WARLSAQWKEDLTERIDKLL-LLRDQLDGCI 118
>sp|P36124|SET3_YEAST SET domain protein 3
Length = 751
Score = 27.7 bits (60), Expect = 8.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 11 NELSRPIKFSRRKHPV---KRRSYSQSHVYNSHSIEIPILSKQN--SLECLNNSYDNYNS 175
+ +S P K + P+ K Y +SH+ N + IP+L N S + N+ ++ +
Sbjct: 615 SNISVPKKNETSEKPLIITKSTDYDESHITNIEELPIPVLLPINKTSRQTANDVEESQSK 674
Query: 176 KESKIS 193
E K+S
Sbjct: 675 NEHKLS 680
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
Length = 290
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 202 KWGE---HELDYLLFIVRDV 218
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
Length = 286
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 107 QWNESYKHEIDYMIFVLRDV 48
+W E HE+DY++F++RDV
Sbjct: 198 KWGE---HELDYLLFIVRDV 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,947,817
Number of Sequences: 369166
Number of extensions: 381047
Number of successful extensions: 1103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)