Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I04
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O56075|POLG_PEMVM Genome polyprotein [Contains: P1 prote... 32 0.91
sp|P09820|FIXC_RHIME Protein fixC 31 2.0
sp|Q5M7W7|SYPM_RAT Probable prolyl-tRNA synthetase, mitocho... 30 2.6
sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng... 30 3.4
sp|Q9EQK5|MVP_MOUSE Major vault protein (MVP) 30 4.5
sp|Q5UPJ3|YL116_MIMIV Hypothetical protein L116 30 4.5
sp|Q95LJ2|SPESP_MACFA Sperm equatorial segment protein 1 pr... 29 5.9
sp|Q9XEK9|IF2C_EUGGR Translation initiation factor IF-2, ch... 29 5.9
sp|P00185|CP1A1_RAT Cytochrome P450 1A1 (CYP1A1) (CYPIA1) (... 29 7.7
sp|Q8CFI5|SYPM_MOUSE Probable prolyl-tRNA synthetase, mitoc... 29 7.7
>sp|O56075|POLG_PEMVM Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein
B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat
protein (CP)]
Length = 3099
Score = 32.0 bits (71), Expect = 0.91
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 321 PNCTVRTRF-DLLNDRSLEKQRNEVLGQSIQRLHQITTQNCYNNIYLQGP*QHARSIV 151
PNCT + +L+ SLE+ RN ++G+S++RL T+ C + + G H S V
Sbjct: 563 PNCTRKLAIGNLIVPMSLERARNALIGESVERLP--VTEACVSRV--NGAFMHVASCV 616
>sp|P09820|FIXC_RHIME Protein fixC
Length = 435
Score = 30.8 bits (68), Expect = 2.0
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 420 VDRHLVHHYRYWIFDLGPHTAIIYRVLAMATVPPN--CTVRTRFD 292
++RHLV R+WI D HT + YR V PN +R +FD
Sbjct: 68 LERHLVEQ-RFWIMDDTSHTGMHYRSDDFNEVTPNRYTIIRAQFD 111
>sp|Q5M7W7|SYPM_RAT Probable prolyl-tRNA synthetase, mitochondrial precursor
(Proline--tRNA ligase) (ProRS)
Length = 475
Score = 30.4 bits (67), Expect = 2.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 234 GCFGLEPHFVVSPDSC-RLINRSASALYNLEAPLPSREPGKLWRYAG 371
GC+ L P+ V + + R+I++ A+ + +PS P +LWR G
Sbjct: 86 GCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWRATG 132
>sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng2 (Ring assembly protein 2)
Length = 1489
Score = 30.0 bits (66), Expect = 3.4
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = -1
Query: 447 NRKKHSLENVDRHLVHHYRYWIFDLGPHTAIIYRVLAMATVPPNCTVR--------TRFD 292
N+ L+N +++ + G + YR LA A PP TV+ T FD
Sbjct: 673 NKFSRKLQNFHKNMENPIVAKSIFRGRQEGLAYRELATAKNPPVMTVKNFVHLLDDTNFD 732
Query: 291 LLNDRSLEKQRNEVLGQ 241
+ LEK R E++ Q
Sbjct: 733 FEEEVLLEKMRKEIVQQ 749
>sp|Q9EQK5|MVP_MOUSE Major vault protein (MVP)
Length = 861
Score = 29.6 bits (65), Expect = 4.5
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 378 DLGPHTAIIYRVLAMATVPPNCTVRTRFDLLNDRSLEKQRNEVLGQSIQRLHQITTQN 205
D GP A++ R A P N V + D+ + ++++ + L +S+Q +ITT +
Sbjct: 611 DAGPDGALLPRARDRAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNS 668
>sp|Q5UPJ3|YL116_MIMIV Hypothetical protein L116
Length = 563
Score = 29.6 bits (65), Expect = 4.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 10 QSTERSRKLWEEARRLDPSLSAECPLSDDSSEEAEFLPPPRKKLHEE 150
+S RSRK+ + R + SL+ S D S+E + P P KKL E+
Sbjct: 238 KSLGRSRKMSRDESR-EKSLNESHKRSRDESQEKSYEPRPAKKLREK 283
>sp|Q95LJ2|SPESP_MACFA Sperm equatorial segment protein 1 precursor
Length = 352
Score = 29.3 bits (64), Expect = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 252 PHFVVSPDSCRLINRSASALYNLEAPLPSREPGKLWRYAGPDQI 383
P VSPD + +N L NL +P +EPG+ + P +
Sbjct: 21 PSITVSPDEEQNLNHYIQVLENLVLSVPPKEPGREKKSNSPKHV 64
>sp|Q9XEK9|IF2C_EUGGR Translation initiation factor IF-2, chloroplast
Length = 822
Score = 29.3 bits (64), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 41 KKPVDWTPPCRPSAPFRMIVLRKPSSCLLP 130
KKP D PP PSAP VLR+P +P
Sbjct: 58 KKPADPQPPATPSAP----VLRRPVRTAMP 83
>sp|P00185|CP1A1_RAT Cytochrome P450 1A1 (CYP1A1) (CYPIA1) (P450-C) (P450MT2) [Contains:
Cytochrome P450MT2A; Cytochrome P450MT2B]
Length = 524
Score = 28.9 bits (63), Expect = 7.7
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Frame = +1
Query: 25 SRKLWEEARRL------------DPSLSAECPLSDDSSEEAEFLPPPRKKLHEE 150
S LW RRL DP+L++ C L + S+EAE+L +KL E
Sbjct: 131 SGPLWAARRRLAQNALKSFSIASDPTLASSCYLEEHVSKEAEYLISKFQKLMAE 184
>sp|Q8CFI5|SYPM_MOUSE Probable prolyl-tRNA synthetase, mitochondrial precursor
(Proline--tRNA ligase) (ProRS)
Length = 475
Score = 28.9 bits (63), Expect = 7.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 234 GCFGLEPHFVVSPDSC-RLINRSASALYNLEAPLPSREPGKLWR 362
GC+ L P+ V + + R+I++ A+ + +PS P +LWR
Sbjct: 86 GCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWR 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,934,130
Number of Sequences: 369166
Number of extensions: 1414340
Number of successful extensions: 3841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3840
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)