Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H06
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 154 1e-37
sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 p... 150 2e-36
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 144 1e-34
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 139 3e-33
sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor 108 4e-24
sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor 108 5e-24
sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (... 108 7e-24
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 107 9e-24
sp|P56203|CATW_MOUSE Cathepsin W precursor (Lymphopain) 105 6e-23
sp|P43295|A494_ARATH Probable cysteine proteinase A494 prec... 103 1e-22
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 154 bits (388), Expect = 1e-37
Identities = 68/129 (52%), Positives = 90/129 (69%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGGI 182
YPY A + C L +AVYIN S ++ ET +AAW N IS+G+NA +QFY+ GI
Sbjct: 191 YPYDAKNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGI 250
Query: 183 SHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIVKNSWGPGWGEDGYYRVFRGTGVCGLN 362
SHP+ IFC+ LDH VL+VG+ + EPFWIVKNSWG WGE+GY+R++RG G CG+N
Sbjct: 251 SHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGIN 310
Query: 363 KMPTSAIIH 389
+ TSA+I+
Sbjct: 311 TVATSAMIY 319
>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 precursor
Length = 614
Score = 150 bits (378), Expect = 2e-36
Identities = 69/134 (51%), Positives = 90/134 (67%), Gaps = 6/134 (4%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDS-SETTMAAWCSINGPISIGINAFAMQFYRGG 179
YPYKA + C +++ V + G + +ET M W NGPISIGINA AMQFYRGG
Sbjct: 480 YPYKAKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGG 539
Query: 180 ISHPFKIFCNPDHLDHGVLIVGFNTTSSGE-----PFWIVKNSWGPGWGEDGYYRVFRGT 344
+SHP+K C+ +LDHGVL+VG+ + P+WIVKNSWGP WGE GYYRV+RG
Sbjct: 540 VSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGD 599
Query: 345 GVCGLNKMPTSAII 386
CG+++M TSA++
Sbjct: 600 NTCGVSEMATSAVL 613
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 144 bits (362), Expect = 1e-34
Identities = 62/129 (48%), Positives = 87/129 (67%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGGI 182
Y Y+ +TC VYIN S + +E +AAW + GPIS+ INAF MQFYR GI
Sbjct: 335 YGYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGI 394
Query: 183 SHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIVKNSWGPGWGEDGYYRVFRGTGVCGLN 362
+HPF+ C+P +DH VL+VG+ S+ P+W +KNSWG WGE+GYY ++RG+G CG+N
Sbjct: 395 AHPFRPLCSPWFIDHAVLLVGYGNRSN-IPYWAIKNSWGSDWGEEGYYYLYRGSGACGVN 453
Query: 363 KMPTSAIIH 389
M +SA+++
Sbjct: 454 TMASSAVVN 462
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 139 bits (350), Expect = 3e-33
Identities = 62/128 (48%), Positives = 82/128 (64%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGGI 182
Y Y+ ++C K VYIN S + +E +AAW + GPIS+ INAF MQFYR GI
Sbjct: 357 YSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGI 416
Query: 183 SHPFKIFCNPDHLDHGVLIVGFNTTSSGEPFWIVKNSWGPGWGEDGYYRVFRGTGVCGLN 362
S P + C+P +DH VL+VG+ S PFW +KNSWG WGE GYY + RG+G CG+N
Sbjct: 417 SRPLRPLCSPWLIDHAVLLVGYGNRSD-VPFWAIKNSWGTDWGEKGYYYLHRGSGACGVN 475
Query: 363 KMPTSAII 386
M +SA++
Sbjct: 476 TMASSAVV 483
>sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor
Length = 371
Score = 108 bits (271), Expect = 4e-24
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGGI 182
YPY C DKSKI + + E ++A +GP++IGINA MQ Y GG+
Sbjct: 232 YPYTGSDGKCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGV 291
Query: 183 SHPFKIFCNPDHLDHGVLIVGFNTTS------SGEPFWIVKNSWGPGWGEDGYYRVFRGT 344
S P+ C HLDHGVL+VG+ + +P+WI+KNSWG WGE+GYY++ RG+
Sbjct: 292 SCPY--ICG-RHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGS 348
Query: 345 GV---CGLNKM-PTSAIIH 389
V CG++ M T + +H
Sbjct: 349 NVRNKCGVDSMVSTVSAVH 367
>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor
Length = 343
Score = 108 bits (270), Expect = 5e-24
Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Frame = +3
Query: 3 YPYKADRKT-CMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 179
YPY A+ T C + + I I+ I +ET MA + GP++I +A QFY GG
Sbjct: 214 YPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGG 273
Query: 180 ISHPFKIFCNPDHLDHGVLIVGFNTTSS----GEPFWIVKNSWGPGWGEDGYYRVFRGTG 347
+ F I CNP+ LDHG+LIVG++ ++ P+WIVKNSWG WGE GY + RG
Sbjct: 274 V---FDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKN 330
Query: 348 VCGLNKMPTSAII 386
CG++ +++II
Sbjct: 331 TCGVSNFVSTSII 343
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (RD19)
Length = 368
Score = 108 bits (269), Expect = 7e-24
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 7/129 (5%)
Frame = +3
Query: 3 YPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 179
YPY D KTC LDKSKI ++ I E +AA NGP+++ INA MQ Y GG
Sbjct: 230 YPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGG 289
Query: 180 ISHPFKIFCNPDHLDHGVLIVGFNTTSSG------EPFWIVKNSWGPGWGEDGYYRVFRG 341
+S P+ C L+HGVL+VG+ +P+WI+KNSWG WGE+G+Y++ +G
Sbjct: 290 VSCPY--ICTR-RLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKG 346
Query: 342 TGVCGLNKM 368
+CG++ M
Sbjct: 347 RNICGVDSM 355
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 107 bits (268), Expect = 9e-24
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Frame = +3
Query: 3 YPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGGI 182
Y Y +C DKSK+ ++ + E +AA NGP+++ INA MQ Y G+
Sbjct: 227 YAYTGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGV 286
Query: 183 SHPFKIFCNPDHLDHGVLIVGFNTTSSG------EPFWIVKNSWGPGWGEDGYYRVFRGT 344
S P+ C LDHGVL+VGF + +P+WI+KNSWG WGE GYY++ RG
Sbjct: 287 SCPY--VCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGR 344
Query: 345 GVCGLNKM 368
VCG++ M
Sbjct: 345 NVCGVDSM 352
>sp|P56203|CATW_MOUSE Cathepsin W precursor (Lymphopain)
Length = 371
Score = 105 bits (261), Expect = 6e-23
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 18/144 (12%)
Frame = +3
Query: 3 YPYKADRKT--CMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRG 176
YP++ DRK C+ K K +I + ++E +A + +++GPI++ IN +Q Y+
Sbjct: 213 YPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQK 272
Query: 177 GISHPFKIFCNPDHLDHGVLIVGFNTTSSG----------------EPFWIVKNSWGPGW 308
G+ C+P +DH VL+VGF G P+WI+KNSWG W
Sbjct: 273 GVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHW 332
Query: 309 GEDGYYRVFRGTGVCGLNKMPTSA 380
GE GY+R++RG CG+ K P +A
Sbjct: 333 GEKGYFRLYRGNNTCGVTKYPFTA 356
>sp|P43295|A494_ARATH Probable cysteine proteinase A494 precursor
Length = 361
Score = 103 bits (258), Expect = 1e-22
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 7/129 (5%)
Frame = +3
Query: 3 YPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 179
YPY D +C LD+SKI ++ + +E +AA NGP+++ INA MQ Y GG
Sbjct: 227 YPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGG 286
Query: 180 ISHPFKIFCNPDHLDHGVLIVGFNTTSSGE------PFWIVKNSWGPGWGEDGYYRVFRG 341
+S P+ C+ L+HGVL+VG+ + + P+WI+KNSWG WGE+G+Y++ +G
Sbjct: 287 VSCPY--ICSR-RLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKG 343
Query: 342 TGVCGLNKM 368
+CG++ +
Sbjct: 344 RNICGVDSL 352
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,551,846
Number of Sequences: 369166
Number of extensions: 1020420
Number of successful extensions: 2426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)