Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H05
(588 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scrambla... 39 0.013
sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceo... 34 0.24
sp|O16005|OPSD_SEPOF Rhodopsin 34 0.31
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 33 0.53
sp|Q8R311|CAG5_MOUSE Cutaneous T-cell lymphoma-associated a... 33 0.53
sp|Q96T58|MINT_HUMAN Msx2-interacting protein (SPEN homolog... 32 1.2
sp|Q9BZF1|OSR8_HUMAN Oxysterol binding protein-related prot... 32 1.5
sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation fac... 32 1.5
sp|Q9BXF3|CECR2_HUMAN Cat eye syndrome critical region prot... 31 2.6
sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding pro... 30 3.4
>sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scramblase 1) (Ca(2+)-dependent
phospholipid scramblase 1) (Erythrocyte phospholipid
scramblase) (MmTRA1b)
Length = 318
Score = 38.5 bits (88), Expect = 0.013
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +3
Query: 360 PPAQCTYPQGQTVYPPPPIGNSDYQRAAYPVYPTNQGYVNPPPY 491
PP YP Q YPPPP G+S A +PV NQ N P Y
Sbjct: 33 PPGYSGYPGPQVSYPPPPAGHSGPGPAGFPV--PNQPVYNQPVY 74
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 475
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 318 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYP----VYPTNQGYVNPP 485
P A V Q +PPA +PQ V+P PP G +P V+P+N G V+P
Sbjct: 392 PPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPPPGVHPAAPGVHPQPPGVHPSNPG-VHPA 450
Query: 486 P 488
P
Sbjct: 451 P 451
Score = 28.9 bits (63), Expect = 9.9
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +3
Query: 309 VAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYP-----VYPTNQGY 473
V P + V Q +PPA +PQ V+PP P G +P V+P G
Sbjct: 375 VHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAP-GIHPQAPGVHPQPPPGVHPAAPGV 433
Query: 474 VNPPPYV 494
PP V
Sbjct: 434 HPQPPGV 440
>sp|O16005|OPSD_SEPOF Rhodopsin
Length = 464
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Frame = +3
Query: 321 AAVTVISQDQTYYPPAQCTYPQG---QTVYPPPPIGNSDYQRAAYPV----YPTNQGYV- 476
A + + Q Q YPP PQG YPPPP Y YP YP QGY
Sbjct: 375 AMMQKMQQQQAAYPPQGAYPPQGGYPPQGYPPPP-AQGGYPPQGYPPPPQGYPPAQGYPP 433
Query: 477 --NPPP 488
PPP
Sbjct: 434 QGYPPP 439
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 33.1 bits (74), Expect = 0.53
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 318 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYP----VYPTNQGYVNPP 485
PAA V Q +PPA +PQ V+P PP G +P V+P+N G V+PP
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPP-GVHPSAPGVHPQPPGVHPSNPG-VHPP 438
>sp|Q8R311|CAG5_MOUSE Cutaneous T-cell lymphoma-associated antigen 5 homolog (cTAGE-5
protein) (Meningioma-expressed antigen 6)
Length = 779
Score = 33.1 bits (74), Expect = 0.53
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 279 RTGIQRRGRVVAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPI-GNSDYQRAAYPVY 455
R+ RRG P ++ + + Y+PP P P PP G + Y +P Y
Sbjct: 685 RSQFMRRGPSFPPPPPGSIYAAPRDYFPPRDFPGP------PLPPFPGRTVYAPRGFPPY 738
Query: 456 -PTNQGYVNPPPY 491
P G+ PPP+
Sbjct: 739 LPPRAGFFPPPPH 751
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein (SPEN homolog) (SMART/HDAC1 associated
repressor protein)
Length = 3664
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 23/70 (32%)
Frame = +3
Query: 348 QTYYPPAQCTY-----------------------PQGQTVYPPPPIGNSDYQRAAYPVYP 458
+TY+PPAQ T+ P+G+ + PP P+ ++ + A P P
Sbjct: 3312 RTYHPPAQLTHTQFPAASSVGLPSRTKTAAQGPPPEGEPLQPPQPVQSTQPAQPAPPCPP 3371
Query: 459 TNQGYVNPPP 488
+ G PP
Sbjct: 3372 SQLGQPGQPP 3381
>sp|Q9BZF1|OSR8_HUMAN Oxysterol binding protein-related protein 8 (OSBP-related protein
8) (ORP-8)
Length = 889
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +3
Query: 279 RTGIQRRGRVVAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYPVYP 458
RT + + V P+ V S + P + + QG+ YP P +Q + P P
Sbjct: 12 RTSLLGDSKDVLGPSTVVANSDESQLLTPGKMSQRQGKEAYPTPT--KDLHQPSLSPASP 69
Query: 459 TNQGYVNPPPYVDIIQNKNK 518
+QG+ DI QNK++
Sbjct: 70 HSQGFERGKE--DISQNKDE 87
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1)
(eIF-4G1) (eIF-4G 1) (p220)
Length = 1600
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +3
Query: 273 SARTGIQRRGRVVAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDY--QRAAY 446
SA + +Q PAA + Q P+Q +YP Q Y P G S Y Y
Sbjct: 61 SAASRVQSAAPARPGPAAHVYPAGSQVMMIPSQISYPASQGAYYIPGQGRSTYVVPTQQY 120
Query: 447 PVYPTNQGY 473
PV P G+
Sbjct: 121 PVQPGAPGF 129
>sp|Q9BXF3|CECR2_HUMAN Cat eye syndrome critical region protein 2
Length = 1484
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 351 TYYPPAQCTYPQGQ-TVYPPPPIGNSDYQRAAYPV-YPTNQGYVNPPPYVDIIQNKN 515
+Y+PP Q +Y Q T Y P SD+QR +P P+ PPP + +KN
Sbjct: 1205 SYHPPPQPSYHHYQRTPYYACPQSFSDWQRPLHPQGSPSGPPASQPPPPRSLFSDKN 1261
>sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3
Length = 802
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 360 PPAQCTYPQGQTVYPPPPIGNSDYQRAAYPVYPTNQGYVNPPP 488
PP Q Y QG ++ PP Y P +QGY + PP
Sbjct: 587 PPPQTNYYQGYSMPPPQQQQQQPYGNYGMPPPSHDQGYGSQPP 629
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,786,850
Number of Sequences: 369166
Number of extensions: 1336957
Number of successful extensions: 4165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4116
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)