Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H03
(499 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 74 2e-13
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 72 6e-13
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 72 9e-13
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 72 9e-13
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 72 9e-13
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 72 9e-13
sp|P62169|CSPC_BACAN Cold shock-like protein cspC >gi|49061... 70 3e-12
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 67 2e-11
sp|P39158|CSPC_BACSU Cold shock protein cspC 67 2e-11
sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG 67 2e-11
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 73.6 bits (179), Expect = 2e-13
Identities = 44/107 (41%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 39 GTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 97
Query: 172 LEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 312
EA K +N R Y R G +Y+ Q+Y N
Sbjct: 98 AEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNN 143
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 72.4 bits (176), Expect = 6e-13
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 39 GTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 97
Query: 172 LEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 312
EA K +N+ R Y R G +Y+ Q+Y +
Sbjct: 98 AEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQ-QNYQNS 143
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 71.6 bits (174), Expect = 9e-13
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Frame = +1
Query: 1 SGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSK 168
SG VKWFN KSGYGFI R+D + DVFVH ++I N S+ DGE+V+FDVV+G K
Sbjct: 34 SGTVKWFNVKSGYGFINRDDTKE-DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEK 92
Query: 169 GLEA 180
G EA
Sbjct: 93 GNEA 96
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 71.6 bits (174), Expect = 9e-13
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 117
Query: 172 LEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 312
EA K +N R Y R G +Y+ Q+Y +
Sbjct: 118 AEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 71.6 bits (174), Expect = 9e-13
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
Query: 172 LEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 312
EA K +N R Y R G +Y+ Q+Y +
Sbjct: 120 AEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 71.6 bits (174), Expect = 9e-13
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 58 GTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 116
Query: 172 LEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 312
EA K +N R Y R G +Y+ Q+Y +
Sbjct: 117 AEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 162
>sp|P62169|CSPC_BACAN Cold shock-like protein cspC
sp|P62170|CSPC_BACCE Cold shock-like protein cspC
sp|P62171|CSPC_BACCR Cold shock-like protein cspC
Length = 65
Score = 70.1 bits (170), Expect = 3e-12
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 180
G VKWFN++ G+GFI+REDG+ DVFVH S+I SL +G++V+FD+V G++G +A
Sbjct: 3 GRVKWFNAEKGFGFIEREDGD--DVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGSKG 171
G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG
Sbjct: 44 GTVKWFNVRNGYGFINRNDSKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKG 102
Query: 172 LEA 180
EA
Sbjct: 103 AEA 105
>sp|P39158|CSPC_BACSU Cold shock protein cspC
Length = 66
Score = 67.4 bits (163), Expect = 2e-11
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +1
Query: 4 GHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 180
G VKWFN++ G+GFI+RE+G+D VFVH S+I + SL +G++V FDV QG++G +A
Sbjct: 4 GTVKWFNAEKGFGFIERENGDD--VFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQA 60
>sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG
Length = 70
Score = 67.4 bits (163), Expect = 2e-11
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +1
Query: 1 SGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 180
+G VKWFN + G+GFI +++G D DVFVH SI + +LA+G++V F+V QG KGL+A
Sbjct: 6 TGLVKWFNEEKGFGFITQDNGGD-DVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKGLQA 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,893,739
Number of Sequences: 369166
Number of extensions: 824393
Number of successful extensions: 2156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2083
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)