Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_G21
(614 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 178 9e-45
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 175 9e-44
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 174 2e-43
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 173 4e-43
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 172 5e-43
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 172 6e-43
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 172 8e-43
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 172 8e-43
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 171 2e-42
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 170 3e-42
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 178 bits (452), Expect = 9e-45
Identities = 86/155 (55%), Positives = 119/155 (76%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V +P Q T +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V SE+ LL ML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF YGL ++Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N PTLASV H
Sbjct: 181 TPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
+AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 241 LANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 175 bits (443), Expect = 9e-44
Identities = 89/155 (57%), Positives = 113/155 (72%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL ML I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF YGL IQQ+Y+NGS YSP+ LDITED + + F+E + +A+V L + PTLAS+PH
Sbjct: 181 SPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
I N K V+ ++V TDY+ A+ +K +L DP++F
Sbjct: 241 IINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 174 bits (440), Expect = 2e-43
Identities = 89/155 (57%), Positives = 111/155 (71%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF +GL IQQ+Y+NGS YSP+ LDITED + F+E + +A+V L + PT+ASVPH
Sbjct: 181 SPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
+ N K V+ L+V TDY+ A+ +K +L DP+ F
Sbjct: 241 VVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 173 bits (438), Expect = 4e-43
Identities = 85/155 (54%), Positives = 111/155 (71%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I
Sbjct: 121 VIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF YGL + Q+Y++GS +SP+ LDI +D+ F + +AAV L++ PT+AS PH
Sbjct: 181 SPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 241 IANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 172 bits (437), Expect = 5e-43
Identities = 92/158 (58%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK- 185
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNM 180
Query: 186 --IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASV 359
I PF YGL IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PTLAS+
Sbjct: 181 LNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASI 240
Query: 360 PHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 241 PHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 172 bits (436), Expect = 6e-43
Identities = 90/155 (58%), Positives = 110/155 (70%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 172 bits (435), Expect = 8e-43
Identities = 91/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF +GL IQQ+++NGS YSP+ LDITE + F+E + VA+V L + PT+ASVPH
Sbjct: 181 SPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 172 bits (435), Expect = 8e-43
Identities = 88/155 (56%), Positives = 111/155 (71%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF +GL IQQ+++NGS Y+P+ LDITE+ + + F+E + VA+V L + PT+ASVPH
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
I N K V+ ++V TDY AE +K +L DP+ F
Sbjct: 241 IVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 171 bits (432), Expect = 2e-42
Identities = 85/155 (54%), Positives = 110/155 (70%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I
Sbjct: 121 VIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNI 180
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF YGL I Q+Y++GS +SP+ LDI +D+ F +AAVSL + PT+AS PH
Sbjct: 181 SPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHS 240
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
IAN K ++ ++ T+ K+A IKE++KDP+KF
Sbjct: 241 IANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 170 bits (430), Expect = 3e-42
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 9 VMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKI 188
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL ML I
Sbjct: 112 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLNI 171
Query: 189 FPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHI 368
PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH
Sbjct: 172 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 231
Query: 369 IANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 473
I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 232 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,902,043
Number of Sequences: 369166
Number of extensions: 1135283
Number of successful extensions: 2880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)