Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_G14
(407 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 35 0.076
sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (I... 33 0.29
sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 30 1.9
sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) 30 2.5
sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 (I... 30 2.5
sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 29 4.2
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
Length = 589
Score = 34.7 bits (78), Expect = 0.076
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 324 SKRMKFRRTTKGNISIAETDINGLFITL 407
S + F+R+ KGN++I+E D NG FITL
Sbjct: 465 STKTTFQRSAKGNVTISECDPNGKFITL 492
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein
B1) (IF-B1) (Cel IF B1)
Length = 589
Score = 32.7 bits (73), Expect = 0.29
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 288 NELSSQEAGAYQSKRMKFRRTTKGNISIAETDINGLFITL 407
N S++ S + F+R+ KGN++I+E D NG FI L
Sbjct: 453 NTDSTRSVRGEVSTKTTFQRSAKGNVTISECDPNGKFIKL 492
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
A1) (IF-A1) (Cel IF A1)
Length = 575
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 324 SKRMKFRRTTKGNISIAETDINGLFITL 407
+ R F+R+ KGN+SI E +G FI L
Sbjct: 454 ASRQSFQRSAKGNVSIHEASPDGKFIVL 481
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A)
Length = 497
Score = 29.6 bits (65), Expect = 2.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 324 SKRMKFRRTTKGNISIAETDINGLFITL 407
+ R F+R+ KGN+SI ET +G ++ L
Sbjct: 374 ASRTSFQRSAKGNVSIQETAPDGRYVVL 401
>sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 (Intermediate filament protein
B2) (IF-B2) (Cel IF B2)
Length = 543
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 306 EAGAYQSKRMKFRRTTKGNISIAETDINGLFITL 407
++G Q+ R F+R KGN+SI E D G +I L
Sbjct: 414 DSGEVQT-RSSFKRHAKGNVSIVECDPQGKYIIL 446
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
Length = 432
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 324 SKRMKFRRTTKGNISIAETDINGLFITL 407
+ R F+R+ KGN+SI + +G FI L
Sbjct: 309 ASRTSFQRSAKGNVSIQDASSDGKFILL 336
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,272,021
Number of Sequences: 369166
Number of extensions: 132911
Number of successful extensions: 271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)