Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_G08
(618 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 219 4e-57
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 217 2e-56
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 216 3e-56
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 216 3e-56
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 216 4e-56
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 216 4e-56
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 215 6e-56
sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-... 215 6e-56
sp|Q69BK3|UCRI_PONPY Ubiquinol-cytochrome c reductase iron-... 215 6e-56
sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-... 215 6e-56
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 219 bits (558), Expect = 4e-57
Identities = 103/189 (54%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F +YRR E+ T R + R+ SY + +VT +SSM +A
Sbjct: 86 PDFSDYRRSEVLDKTKSSRESSDARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ + IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 206 KKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
++D VVVG
Sbjct: 266 LSDDMVVVG 274
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 217 bits (552), Expect = 2e-56
Identities = 102/189 (53%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F +YRR E+ +T R + R+ SY + +VT +SSM +A
Sbjct: 86 PDFSDYRRSEVLDTTKSSRESSDARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ + IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 206 KKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
+D V+VG
Sbjct: 266 TSDDLVIVG 274
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 216 bits (551), Expect = 3e-56
Identities = 105/189 (55%), Positives = 131/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F +YRR E+ ST R + R+ SY ++ VT +SSM +A
Sbjct: 86 PDFCDYRRPEVLDSTKSSRESSEARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ A IEV LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 206 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
+D VVVG
Sbjct: 266 TSDDMVVVG 274
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 216 bits (551), Expect = 3e-56
Identities = 102/186 (54%), Positives = 129/186 (69%)
Frame = +3
Query: 9 FEYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLS 188
++YRR E+ ST R + R+ SY +++VT +SSM +A L+
Sbjct: 89 YDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLA 148
Query: 189 EASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKP 368
A IE++LS IPEGK++ KWR KPLFVRHRT ++I E AV + LR P+ D +RV+KP
Sbjct: 149 MAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKP 208
Query: 369 EWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIND 548
EW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F D
Sbjct: 209 EWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGD 268
Query: 549 KTVVVG 566
VVVG
Sbjct: 269 DVVVVG 274
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 216 bits (550), Expect = 4e-56
Identities = 102/189 (53%), Positives = 133/189 (70%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F +YRR E+ ST + + R+ SY +++V+ +SSM +A
Sbjct: 86 PDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ + IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D ERV
Sbjct: 146 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 206 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 265
Query: 540 INDKTVVVG 566
+D V+VG
Sbjct: 266 TSDDMVIVG 274
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 216 bits (550), Expect = 4e-56
Identities = 102/189 (53%), Positives = 130/189 (68%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F +YRR E+ T R + R+ SY + +VT +SSM +A
Sbjct: 86 PDFSDYRRSEVLDKTKSSRESSDARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ + IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 206 KKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
D V+VG
Sbjct: 266 TGDDMVIVG 274
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 215 bits (548), Expect = 6e-56
Identities = 104/189 (55%), Positives = 131/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F EYRR E+ ST R + R+ SY ++ VT +SSM +A
Sbjct: 86 PDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ A IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 206 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
+D V+VG
Sbjct: 266 TSDDMVIVG 274
>sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 215 bits (548), Expect = 6e-56
Identities = 103/186 (55%), Positives = 130/186 (69%)
Frame = +3
Query: 9 FEYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLS 188
++YRR E+ ST R + R+ SY ++ VT +SSM +A L+
Sbjct: 89 YDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLA 148
Query: 189 EASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKP 368
A IE++LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KP
Sbjct: 149 MAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKP 208
Query: 369 EWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIND 548
EW+ILIGICTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D
Sbjct: 209 EWVILIGICTHLGCVPIANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSD 268
Query: 549 KTVVVG 566
VVVG
Sbjct: 269 DMVVVG 274
>sp|Q69BK3|UCRI_PONPY Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 215 bits (548), Expect = 6e-56
Identities = 104/189 (55%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F EYRR E+ ST R + R+ SY +++VT +SSM +A
Sbjct: 86 PDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ A IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 206 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPIYEF 265
Query: 540 INDKTVVVG 566
+D V+VG
Sbjct: 266 TSDDMVIVG 274
>sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|Q69BK6|UCRI_PANPA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 215 bits (548), Expect = 6e-56
Identities = 104/189 (55%), Positives = 131/189 (69%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 PEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAK 179
P+F EYRR E+ ST R + R+ SY ++ VT +SSM +A
Sbjct: 86 PDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASAD 145
Query: 180 TLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERV 359
L+ A IE+ LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV
Sbjct: 146 VLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRV 205
Query: 360 QKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 539
+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 206 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
Query: 540 INDKTVVVG 566
+D V+VG
Sbjct: 266 TSDDMVIVG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,075,880
Number of Sequences: 369166
Number of extensions: 1442594
Number of successful extensions: 4171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4115
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)