Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_G04
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQ88|SAS_MOUSE Sarcoma amplified sequence homolog 74 1e-13
sp|Q5U1V9|SAS_RAT Sarcoma amplified sequence homolog 74 1e-13
sp|Q5RAP8|SAS_PONPY Sarcoma amplified sequence homolog 72 5e-13
sp|Q7ZUB3|SAS_BRARE Sarcoma amplified sequence homolog 70 1e-12
sp|Q12999|SAS_HUMAN Sarcoma amplified sequence (Tetraspanin... 69 3e-12
sp|Q7ZWW7|SAS2_XENLA Sarcoma amplified sequence homolog 2 66 3e-11
sp|Q5XHG6|SAS1_XENLA Sarcoma amplified sequence homolog 1 66 3e-11
sp|O95857|TSN13_HUMAN Tetraspanin-13 (Tspan-13) (Transmembr... 64 1e-10
sp|Q5FVL6|TSN13_RAT Tetraspanin-13 (Tspan-13) (Transmembran... 62 3e-10
sp|Q9D8C2|TSN13_MOUSE Tetraspanin-13 (Tspan-13) (Transmembr... 62 3e-10
>sp|Q9CQ88|SAS_MOUSE Sarcoma amplified sequence homolog
Length = 210
Score = 73.6 bits (179), Expect = 1e-13
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFT 209
C L NLT + ++T C + + + CQ C + +KA+K+ G VGL FSFT
Sbjct: 130 CGLFNLTTLR--LQDDTSC--SAVCKTKSSTCQMCGERFLKHSDKALKILGGVGLFFSFT 185
Query: 210 EIIGVWLAIRFRNMRDPIADPKLFL 284
EI+GVWLA+RFRN +DP A+P FL
Sbjct: 186 EILGVWLAMRFRNQKDPRANPSAFL 210
>sp|Q5U1V9|SAS_RAT Sarcoma amplified sequence homolog
Length = 210
Score = 73.6 bits (179), Expect = 1e-13
Identities = 38/85 (44%), Positives = 51/85 (60%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFT 209
C L NLT ++ C+ + + PCQ C + +KA+K+ G VGL FSFT
Sbjct: 130 CGLFNLTTVH---LHDDASCSA-LCKTRSSPCQMCGETFLKHSDKALKILGGVGLFFSFT 185
Query: 210 EIIGVWLAIRFRNMRDPIADPKLFL 284
EI+GVWLA+RFRN +DP A+P FL
Sbjct: 186 EILGVWLAMRFRNQKDPRANPSAFL 210
>sp|Q5RAP8|SAS_PONPY Sarcoma amplified sequence homolog
Length = 210
Score = 71.6 bits (174), Expect = 5e-13
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCPCQQCW-KMLQYSLNKAVKVTGAVGLVFSF 206
C L NLT + CT I + + CQ C K L+YS ++A+K+ G VGL FSF
Sbjct: 130 CGLFNLTTLY---QQDYDFCTA-ICKSQSPTCQMCGEKFLKYS-DEALKILGGVGLFFSF 184
Query: 207 TEIIGVWLAIRFRNMRDPIADPKLFL 284
TEI+GVWLA+RFRN++DP A+P FL
Sbjct: 185 TEILGVWLAMRFRNLKDPRANPSAFL 210
>sp|Q7ZUB3|SAS_BRARE Sarcoma amplified sequence homolog
Length = 212
Score = 70.5 bits (171), Expect = 1e-12
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFT 209
C L N T + ++ CT ++ ++C KMLQ+S ++A+K+ G VGL FSFT
Sbjct: 130 CGLFNSTNLQADIMSDLHLCTSPCTQKKECVTCGL-KMLQHS-SEALKILGGVGLFFSFT 187
Query: 210 EIIGVWLAIRFRNMRDPIADPKLFL 284
EI+GVWLA+R+RN +DP A+P FL
Sbjct: 188 EILGVWLAMRYRNQKDPRANPSAFL 212
>sp|Q12999|SAS_HUMAN Sarcoma amplified sequence (Tetraspanin-31) (Tspan-31)
Length = 210
Score = 69.3 bits (168), Expect = 3e-12
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFT 209
C L NLT + CT I + + CQ C + ++A+K+ G VGL FSFT
Sbjct: 130 CGLFNLTTLY---QQDYDFCTA-ICKSQSPTCQMCGEKFLKHSDEALKILGGVGLFFSFT 185
Query: 210 EIIGVWLAIRFRNMRDPIADPKLFL 284
EI+GVWLA+RFRN +DP A+P FL
Sbjct: 186 EILGVWLAMRFRNQKDPRANPSAFL 210
>sp|Q7ZWW7|SAS2_XENLA Sarcoma amplified sequence homolog 2
Length = 212
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +3
Query: 45 LTCCKGFPANETR--------CCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVF 200
L CC E R C V S CP C + ++A+K+ G VGL F
Sbjct: 127 LDCCGFLNTTEGRDEFKQDVALCIQVCSDPHKCP--SCGDKMLNHADEALKILGGVGLFF 184
Query: 201 SFTEIIGVWLAIRFRNMRDPIADPKLFL 284
SFTEI+GVWLA R+RN +DP A+P FL
Sbjct: 185 SFTEILGVWLAFRYRNQKDPRANPSAFL 212
>sp|Q5XHG6|SAS1_XENLA Sarcoma amplified sequence homolog 1
Length = 212
Score = 65.9 bits (159), Expect = 3e-11
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +3
Query: 30 CKLANLTCCKGFPANETRCCTGVISRYEDCP----CQQCWKMLQYSLNKAVKVTGAVGLV 197
C N T + + C+ V CP C C + ++A+K+ G VGL
Sbjct: 130 CGFLNTTEARELFNKDVALCSHV------CPDPHKCLSCGDKMLNHADEALKILGGVGLF 183
Query: 198 FSFTEIIGVWLAIRFRNMRDPIADPKLFL 284
FSFTEI+GVWLA RFRN +DP A+P FL
Sbjct: 184 FSFTEILGVWLAFRFRNQKDPRANPSAFL 212
>sp|O95857|TSN13_HUMAN Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily member 13)
(Tetraspan NET-6)
Length = 204
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +3
Query: 42 NLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFTEIIG 221
NL CC N C + D C C ++ + ++ G +GL FSFTEI+G
Sbjct: 125 NLNCCGFRSVNPNDTCLASCVK-SDHSCSPCAPIIGEYAGEVLRFVGGIGLFFSFTEILG 183
Query: 222 VWLAIRFRNMRDPIADPKLFL 284
VWL R+RN +DP A+P FL
Sbjct: 184 VWLTYRYRNQKDPRANPSAFL 204
>sp|Q5FVL6|TSN13_RAT Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily member 13)
Length = 204
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +3
Query: 42 NLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFTEIIG 221
NL CC N C ++ C C ++ + ++ G +GL FSFTEI+G
Sbjct: 125 NLNCCGFRNYNPNDTCPASCAKSNQ-KCSSCAPIIGEYAGEVLRFVGGIGLFFSFTEILG 183
Query: 222 VWLAIRFRNMRDPIADPKLFL 284
VWL R+RN +DP A+P FL
Sbjct: 184 VWLTYRYRNQKDPRANPSAFL 204
>sp|Q9D8C2|TSN13_MOUSE Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily member 13)
Length = 204
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +3
Query: 42 NLTCCKGFPANETRCCTGVISRYEDCPCQQCWKMLQYSLNKAVKVTGAVGLVFSFTEIIG 221
NL CC N C ++ C C ++ + ++ G +GL FSFTEI+G
Sbjct: 125 NLNCCGFRSYNPNDTCPASCAKSTQ-KCSSCAPIIGEYAGEVLRFVGGIGLFFSFTEILG 183
Query: 222 VWLAIRFRNMRDPIADPKLFL 284
VWL R+RN +DP A+P FL
Sbjct: 184 VWLTYRYRNQKDPRANPSAFL 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,823,213
Number of Sequences: 369166
Number of extensions: 748202
Number of successful extensions: 1699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)