Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F17
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42524|CCNB_DICDI G2/mitotic-specific cyclin-B 42 0.003
sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog) 38 0.032
sp|P47136|BUD4_YEAST Bud site selection protein BUD4 36 0.16
sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protei... 36 0.16
sp|Q10136|STE7_SCHPO Protein ste7 35 0.21
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 34 0.47
sp|P10961|HSF_YEAST Heat shock factor protein (HSF) (Heat s... 34 0.47
sp|Q86XJ1|GA2L3_HUMAN GAS2-like protein 3 (Growth arrest-sp... 34 0.61
sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6 33 0.80
sp|O42709|MCM10_SCHPO DNA replication licensing factor mcm1... 33 1.0
>sp|P42524|CCNB_DICDI G2/mitotic-specific cyclin-B
Length = 436
Score = 41.6 bits (96), Expect = 0.003
Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Frame = +2
Query: 272 NSIVLRTTQSQSTPMCKISPNSSLPVYSIGSSNQIKVVSTEPLQPDQNIFISQSNNASIS 451
N + ++T S I + +P SIG K+ T L+ + +NN +
Sbjct: 6 NPLNIKTRSHSSMGGGMIMDENKVPKSSIGMDK--KIGGTTGLKSHRGALSDLTNNTHQT 63
Query: 452 NPI--KVYKSSNNVIIKPTSSTANNRPIIRLQPIPSNNQK-KNSIIISKSEPF------- 601
+ K + SNN II P + N I R + I N +NS +IS P
Sbjct: 64 TGMATKTVQLSNNNIIMPQPTNTRNNIITRSKSIIDNGASLRNSALISGVLPNANGPVNK 123
Query: 602 IRNFGISPNVSANNITNHPIKTVSTSITTPIVYENQQEIEVTELME 739
++ I NNI P+ T ++ E Q I++TE+ E
Sbjct: 124 VQKRDIQSMEMMNNIPQQPVMIDDVDNDTNMIQEEQMVIDITEVPE 169
>sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog)
Length = 871
Score = 38.1 bits (87), Expect = 0.032
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Frame = +2
Query: 80 NASGMYPSLNN---IKVLDNMASKAMNQMHTQRAEYNHAKVRTSLPVGSINENQPKILSI 250
N + M+PS +LDN S ++ +T A+YN+A TS P S + K+LS
Sbjct: 138 NFNSMFPSSKQEGPSPLLDNQPSSDLSNFNTIDADYNNASASTSAPATS--ASLKKVLSA 195
Query: 251 KNSGVSKNSIVLRTTQSQSTPMCKISPNSSLPVYSIGSSNQIKVVSTEPLQ 403
++S + + Q+ ST + +PN S P+ I + + +E +Q
Sbjct: 196 EDSVRETITDIETALQNMSTSASR-TPNDSSPLPYIENRPASSLAVSEKIQ 245
>sp|P47136|BUD4_YEAST Bud site selection protein BUD4
Length = 1447
Score = 35.8 bits (81), Expect = 0.16
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 19/244 (7%)
Frame = +2
Query: 83 ASGMYPSLNNIKVLDNMASKAMNQMHTQRAEYNHAKVRTSLPVGSINENQPKILSIKNSG 262
A+G N+ KVL+N+ + A + R E K+ +S ++ QP +LS S
Sbjct: 110 ANGALGHANSPKVLNNLKNMAQDIDKLARDEEKPVKLSSSPLKFTLKSTQP-LLSYPESP 168
Query: 263 VSKNSIVLRT-------------TQSQSTPMCKISPNSSLPVYSIGSSNQIKVVSTEPLQ 403
+ ++SI + T T +P SP S +P+ + S N++ + T L
Sbjct: 169 IHRSSIEIETNYDDEDEEEEDAYTCLTQSPQILHSP-SRIPITNAVSINKLNLDFT--LN 225
Query: 404 PDQNIFISQSNNASISNPIKVYKSSNNVIIKPTSSTANNRPIIRLQPIPSN--NQKKNSI 577
P+++ S+ + S ++ + + SST P+ +PS N NS
Sbjct: 226 PNESDKSLVSDTSVDSTGRELDTKTIPELPFCMSSTPEMTPVDEKCNLPSKLLNTSNNSH 285
Query: 578 IISKS-EPFIRNFGISPNV-SANNITNHPIKT-VSTSITTPIVYENQQEIE-VTELMELK 745
S+S + + IS N+ A++ N+P+ T I +V + QQ +E + + + K
Sbjct: 286 SDSRSPTASVEDLNISTNLPGADSSQNNPVTTDADALIENDVVRDLQQNMEHIDDAFDEK 345
Query: 746 SEID 757
+D
Sbjct: 346 KVLD 349
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
phosphohydrolase 3)
Length = 989
Score = 35.8 bits (81), Expect = 0.16
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 12/207 (5%)
Frame = +2
Query: 107 NNIKVLDNMASKAMNQMHTQRAEYNHAKVRTSLPVGSIN-ENQP--KILSIKNSGVSKN- 274
NN +N + N + N++ + V SI +N+P ++ S+ V N
Sbjct: 161 NNNNNNNNNNNNNNNNNNNNNNNNNNSNSNIEINVPSIQFDNEPAMEVDSVAPLNVPSNH 220
Query: 275 ---SIVLRTTQSQSTPMCKISPNSSLPVYSIGSSNQIKVVSTEPLQPDQNIFISQS--NN 439
++ + T+S ST I + LP SS+ + +T ++ + QS NN
Sbjct: 221 TRTTLAMHNTKSLSTS--NIGLLNILPNQQSSSSSSLSSTTTTTTTTSSSLLMPQSLFNN 278
Query: 440 ASISNPIKVYKSSNNVIIKPTSSTANNRPI---IRLQPIPSNNQKKNSIIISKSEPFIRN 610
++ +N SSN I+ + + ++ P ++LQ + Q+ K+ N
Sbjct: 279 STYNNHHNNNNSSNAGIVGGLNGSTSSLPTQAQVQLQQMQQQMQQHQQHQYKKA-----N 333
Query: 611 FGISPNVSANNITNHPIKTVSTSITTP 691
V NN+ N+P+ T ++S P
Sbjct: 334 LSSLSTVVDNNLNNNPMNTSTSSPAQP 360
>sp|Q10136|STE7_SCHPO Protein ste7
Length = 569
Score = 35.4 bits (80), Expect = 0.21
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Frame = +2
Query: 185 AKVRTSLPVGSINENQPKILSIKNSGVSKNSIVLRTTQSQSTPMCKISPNSSLPVYSIGS 364
+K +SLP N++ I + + +SK L ++QS + + PN + S S
Sbjct: 102 SKSASSLPCSKSNDSMVNICYMLKATISKRYAFLGSSQSAKAELIMVPPNLAGKPLSANS 161
Query: 365 S-----NQIKVVSTEPLQPDQNIFISQSNNASISNPIKVYKSS---NNVIIKPTSSTAN- 517
S ++ + + P +++ S N SNP + SS + +SS+ N
Sbjct: 162 SFGSSAKTFQLPEFDSVTPSASLYKQPSFN---SNPAPITTSSATHTSQFSTSSSSSVNS 218
Query: 518 -NRPIIRLQPIPSNNQKKNSIIISKSE--PFI--RNFGISPNVSANNITNHPIKTVSTSI 682
+ P++ P N + S S PF+ R F +S SA++ PI
Sbjct: 219 VHTPVMVPNPYFQYNSSMTAPSSSSSSVAPFVPRRQFSVS---SASDPPQTPISMSPPIP 275
Query: 683 TTP-----IVYENQQ 712
TP +Y+NQQ
Sbjct: 276 PTPSQFSAFMYQNQQ 290
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 34.3 bits (77), Expect = 0.47
Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Frame = +2
Query: 209 VGSINENQPKILSIKNSGVSKNSIVLRTTQSQSTPMCKISP----NSSLPVYSIGSSNQI 376
+G E ++S +S S +S T+ + ST I P + V S SS+ +
Sbjct: 151 LGEFAEEVEPLISTVSSSSSSSSSTSTTSDTVSTISSSIMPAVAQGYTTTVSSAASSSSL 210
Query: 377 KVVSTEPLQP--------------DQNIFISQSNNASISNPIKVYKSSNNVIIKP--TSS 508
K + P + +++ S ++AS S+ Y +S++ ++ TSS
Sbjct: 211 KSTTINPAKTATLTASSSTVITSSTESVGSSTVSSASSSSVTTSYATSSSTVVSSDATSS 270
Query: 509 TANNRPIIRLQPIPSNNQKKNSIIISKSEPFIRNFGISPNVSANNI--TNHPIKTVSTSI 682
T + S++ ++ S S+P + S + S N ++ I + S+ +
Sbjct: 271 TTTTSSVATSSSTTSSDPTSSTAAASSSDPASSSAAASSSASTENAASSSSAISSSSSMV 330
Query: 683 TTPI 694
+ P+
Sbjct: 331 SAPL 334
>sp|P10961|HSF_YEAST Heat shock factor protein (HSF) (Heat shock transcription factor)
(HSTF)
Length = 833
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Frame = +2
Query: 179 NHAKVRTSLPVGSINENQPKILSIKNSGV----SKNSIVLRTTQSQSTPMCKISPNS--- 337
N+ K+ ++ +G +N I +K++ +NS TT +++ +SPN+
Sbjct: 422 NNEKLNSANNIGLNRDNTGTIDELKSNDSFINDDRNSFTNATTNARNN----MSPNNDDN 477
Query: 338 SLPVYSIGSSNQIKVVSTEPLQPDQNIFISQSNNASISNPIKVYKSSNNV--IIKP---- 499
S+ S ++N+ K + E ++ + +I N +++N + Y S+NN I+P
Sbjct: 478 SIDTASTNTTNRKKNID-ENIKNNNDIINDIIFNTNLANNLSNYNSNNNAGSPIRPYKQR 536
Query: 500 -------TSSTANNRPIIRLQPIPSNNQKKNSII 580
SST++ P + I SNN +K S I
Sbjct: 537 YLLKNRANSSTSSENPSLTPFDIESNNDRKISEI 570
>sp|Q86XJ1|GA2L3_HUMAN GAS2-like protein 3 (Growth arrest-specific 2-like 3)
Length = 694
Score = 33.9 bits (76), Expect = 0.61
Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 140 KAMNQMHTQRAEYNHAKVRTSLPVGSINEN------QPKILSIKNSGVSKNSIVLRTTQS 301
K ++ +T +A+ A+ LP ++ N QPK L + N++ S
Sbjct: 434 KCISSPNTPKAKVIPAQNSADLPESTLLPNKCSGKTQPKYLKHNHISSRDNAVSHLAAHS 493
Query: 302 QSTPMCKISPNSSLPVY---SIGSSNQIKVVSTEPLQPDQNIFISQSNNASISNPIKVYK 472
S+ C P +++PV S SS ++ S++ + S+ A + P+ K
Sbjct: 494 NSSSKCPKLPKANIPVRPKPSFQSSAKMTKTSSKTIATGLGTQSQPSDGAPQAKPVPAQK 553
Query: 473 SSNNVIIKPTSSTANNRPIIRLQPIPSNNQKKNSIIISKSEP 598
+ + + S ++ P+ Q ++ KN + +K +P
Sbjct: 554 LKSALNLNQPVSVSSVSPVKATQ----KSKDKNIVSATKKQP 591
>sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6
Length = 670
Score = 33.5 bits (75), Expect = 0.80
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Frame = +2
Query: 311 PMCKISPNSSLPVYSIGSSN-QIKVVSTEPL-QPDQNIFISQSNNASISNPIKVYKSSNN 484
P+ + +S+ V+S SSN K VS +P+ PD S +++A I SS+
Sbjct: 537 PLHRAKQSSNKTVFSSSSSNISSKDVSPDPIFSPDPADDSSNTSDAGSRCTITSDTSSSA 596
Query: 485 VIIKPTSSTANNRPIIRLQPIPSNNQKKNSIIISKSEPFIRNFGISPNVSANNITNHPIK 664
+ T ++ N + I L N ++ I + +P I+ + NN+ NH
Sbjct: 597 ATMNRTPNSKNPQDIALL------NNFRSEAITPRPKPSSTTTSITTETT-NNMINHSSS 649
Query: 665 TVSTSITTPI 694
T +T+ +P+
Sbjct: 650 TTTTTNNSPL 659
>sp|O42709|MCM10_SCHPO DNA replication licensing factor mcm10 (Minichromosome maintenance
protein 10) (Cdc23 protein)
Length = 593
Score = 33.1 bits (74), Expect = 1.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 431 SNNASISNPIKVYKSSNNVIIKPTSSTANNRPIIRLQPIPSNNQKKNSIIISKSEPFI-- 604
S NASI NP S +N I T+ A+ P+ P + + K + ++ S P I
Sbjct: 483 SFNASIMNPKSSLPSFSNSAILGTNDAASGTPV----PQDTTSTKVSPAVVFTSSPRIFS 538
Query: 605 ----RNFGISPNVSANNITNHPIKT 667
R G P SA+ T H T
Sbjct: 539 PQSLRKIGFDPTHSADASTTHSTAT 563
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,780,800
Number of Sequences: 369166
Number of extensions: 1815947
Number of successful extensions: 4992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4982
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)