Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_E24
(207 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24156|L2CC_DROME L(2)37Cc protein 65 4e-11
sp|Q9BKU4|PHB1_CAEEL Mitochondrial prohibitin complex prote... 63 2e-10
sp|P35232|PHB_HUMAN Prohibitin 54 9e-08
sp|P67778|PHB_MOUSE Prohibitin (B-cell receptor associated ... 54 9e-08
sp|P40961|PHB_YEAST Prohibitin 38 0.006
sp|P50093|PHB2_CAEEL Mitochondrial prohibitin complex prote... 32 0.59
sp|P45030|Y1086_HAEIN Hypothetical protein HI1086 28 8.6
>sp|P24156|L2CC_DROME L(2)37Cc protein
Length = 276
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/54 (53%), Positives = 43/54 (79%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDKQGTLINLPA 164
+AA LLAKSF + G+G +EL+RI+ +E+IA+ LS++R + YLP Q TL+NLP+
Sbjct: 219 EAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGVAYLPSGQSTLLNLPS 272
>sp|Q9BKU4|PHB1_CAEEL Mitochondrial prohibitin complex protein 1 (Prohibitin-1)
Length = 275
Score = 62.8 bits (151), Expect = 2e-10
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDKQGTLINL 158
QAA LLAK+F G+G +EL++I+ +EEIA ++KN+N+ YLP Q TL+NL
Sbjct: 222 QAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQTLLNL 273
>sp|P35232|PHB_HUMAN Prohibitin
Length = 272
Score = 54.3 bits (129), Expect = 9e-08
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDKQGTLINLP 161
+AA L+A S G+G IEL++++ +E+IA+ LS++RNI YLP Q L+ LP
Sbjct: 219 KAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLP 271
>sp|P67778|PHB_MOUSE Prohibitin (B-cell receptor associated protein 32) (BAP 32)
sp|P67779|PHB_RAT Prohibitin
Length = 272
Score = 54.3 bits (129), Expect = 9e-08
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDKQGTLINLP 161
+AA L+A S G+G IEL++++ +E+IA+ LS++RNI YLP Q L+ LP
Sbjct: 219 KAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLP 271
>sp|P40961|PHB_YEAST Prohibitin
Length = 287
Score = 38.1 bits (87), Expect = 0.006
Identities = 14/45 (31%), Positives = 32/45 (71%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDK 137
++A ++K+ + G+G + ++R++ S++IA L+ + N+VYLP +
Sbjct: 221 ESAEFISKALAKVGDGLLLIRRLEASKDIAQTLANSSNVVYLPSQ 265
>sp|P50093|PHB2_CAEEL Mitochondrial prohibitin complex protein 2 (Prohibitin-2)
Length = 286
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/52 (30%), Positives = 35/52 (67%)
Frame = +3
Query: 3 QAALLLAKSFNQCGEGFIELQRIQTSEEIAHLLSKNRNIVYLPDKQGTLINL 158
++A LL ++ GF++L++I+ +++IA ++S++ N YLP G ++N+
Sbjct: 224 ESAKLLGEAMKN-DPGFLKLRKIRAAQKIARIVSESGNKTYLP-TGGLMLNI 273
>sp|P45030|Y1086_HAEIN Hypothetical protein HI1086
Length = 261
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 125 INYISILGQQMRDFFRGL 72
+N+IS LG+Q+ DFFR L
Sbjct: 3 VNFISALGKQVIDFFRAL 20
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,399,128
Number of Sequences: 369166
Number of extensions: 338200
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)