Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_E20
(449 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 259 3e-69
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 258 4e-69
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 258 6e-69
sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha) 257 7e-69
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 257 1e-68
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 256 2e-68
sp|Q10119|EF1A2_SCHPO Elongation factor 1-alpha-B/C (EF-1-a... 255 3e-68
sp|P50522|EF1A1_SCHPO Elongation factor 1-alpha-A (EF-1-alp... 255 3e-68
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 255 4e-68
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 254 6e-68
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 259 bits (661), Expect = 3e-69
Identities = 122/147 (82%), Positives = 137/147 (93%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
+GKTLL+ALDS+ PP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ
Sbjct: 224 TGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQ 283
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
LTTEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQ
Sbjct: 284 NLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQ 343
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VIIMNHPG+I AGY+PVLDCHTAHIAC
Sbjct: 344 VIIMNHPGQISAGYTPVLDCHTAHIAC 370
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 258 bits (659), Expect = 4e-69
Identities = 121/147 (82%), Positives = 137/147 (93%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
SG +LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP
Sbjct: 224 SGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPV 283
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +Q
Sbjct: 284 NITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQ 343
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VII+NHPG+I AGYSPV+DCHTAHIAC
Sbjct: 344 VIILNHPGQISAGYSPVIDCHTAHIAC 370
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 258 bits (658), Expect = 6e-69
Identities = 122/147 (82%), Positives = 137/147 (93%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
SGKTLL+ALDS+ PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ
Sbjct: 224 SGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
+TTEVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VIIMNHPG+I GY+PVLDCHTAHIAC
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTAHIAC 370
>sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 257 bits (657), Expect = 7e-69
Identities = 120/149 (80%), Positives = 135/149 (90%)
Frame = +3
Query: 3 KTSGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFA 182
K +GKTLL+A+D++EPPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGI+K GMVVTFA
Sbjct: 220 KVTGKTLLEAIDAIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFA 279
Query: 183 PQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFV 362
P G+TTEVKSVEMHHE L E +PGDNVGFN+KNVSVKEIRRGNVC DSK+DP + F
Sbjct: 280 PAGVTTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFN 339
Query: 363 AQVIIMNHPGEIHAGYSPVLDCHTAHIAC 449
AQVI++NHPG+I AGYSPVLDCHTAHIAC
Sbjct: 340 AQVIVLNHPGQISAGYSPVLDCHTAHIAC 368
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 257 bits (656), Expect = 1e-68
Identities = 120/147 (81%), Positives = 137/147 (93%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
SG +LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP
Sbjct: 224 SGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPV 283
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +Q
Sbjct: 284 NITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQ 343
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VII+NHPG+I AGYSPV+DCHTAHIAC
Sbjct: 344 VIILNHPGQISAGYSPVIDCHTAHIAC 370
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 256 bits (654), Expect = 2e-68
Identities = 118/147 (80%), Positives = 136/147 (92%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
SGKTLLDA+D+++PP RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP
Sbjct: 222 SGKTLLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPA 281
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQ
Sbjct: 282 NVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQ 341
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VI++NHPG+I AGY+PVLDCHTAHIAC
Sbjct: 342 VIVLNHPGQIGAGYAPVLDCHTAHIAC 368
>sp|Q10119|EF1A2_SCHPO Elongation factor 1-alpha-B/C (EF-1-alpha-B/C)
Length = 460
Score = 255 bits (652), Expect = 3e-68
Identities = 118/146 (80%), Positives = 132/146 (90%)
Frame = +3
Query: 12 GKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQG 191
GKTLL+A+DS+EPP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+VTFAP G
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 192 LTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQV 371
+TTEVKSVEMHHE+L LPGDNVGFN+KNVSVK+IRRGNVC DSK+DP F AQV
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQV 342
Query: 372 IIMNHPGEIHAGYSPVLDCHTAHIAC 449
II+NHPG+I AGYSPVLDCHTAHIAC
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIAC 368
>sp|P50522|EF1A1_SCHPO Elongation factor 1-alpha-A (EF-1-alpha-A)
Length = 460
Score = 255 bits (652), Expect = 3e-68
Identities = 118/146 (80%), Positives = 132/146 (90%)
Frame = +3
Query: 12 GKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQG 191
GKTLL+A+DS+EPP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+VTFAP G
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 192 LTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQV 371
+TTEVKSVEMHHE+L LPGDNVGFN+KNVSVK+IRRGNVC DSK+DP F AQV
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQV 342
Query: 372 IIMNHPGEIHAGYSPVLDCHTAHIAC 449
II+NHPG+I AGYSPVLDCHTAHIAC
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIAC 368
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 255 bits (651), Expect = 4e-68
Identities = 119/149 (79%), Positives = 134/149 (89%)
Frame = +3
Query: 3 KTSGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFA 182
K +GKTLL+A+D+++PPTRP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFA
Sbjct: 220 KATGKTLLEAIDAVDPPTRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFA 279
Query: 183 PQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFV 362
P G+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVKEIRRGNV DSK+DP + F
Sbjct: 280 PAGVTTEVKSVEMHHEQLPEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFT 339
Query: 363 AQVIIMNHPGEIHAGYSPVLDCHTAHIAC 449
AQVII NHPG+I AGYSPVLDCHTAHIAC
Sbjct: 340 AQVIIFNHPGQISAGYSPVLDCHTAHIAC 368
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 254 bits (649), Expect = 6e-68
Identities = 120/147 (81%), Positives = 134/147 (91%)
Frame = +3
Query: 9 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 188
SG TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP
Sbjct: 224 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 283
Query: 189 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 368
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQ
Sbjct: 284 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343
Query: 369 VIIMNHPGEIHAGYSPVLDCHTAHIAC 449
VII+NHPG+I AGY+PVLDCHTAHIAC
Sbjct: 344 VIILNHPGQISAGYAPVLDCHTAHIAC 370
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,099,815
Number of Sequences: 369166
Number of extensions: 1061865
Number of successful extensions: 3873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3660
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)