Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_E05
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 267 2e-71
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 267 2e-71
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 266 6e-71
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 265 7e-71
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 265 9e-71
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 265 9e-71
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 265 1e-70
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 265 1e-70
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 265 1e-70
sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (R... 264 2e-70
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 267 bits (683), Expect = 2e-71
Identities = 125/201 (62%), Positives = 163/201 (81%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK E+I+ ++GKV+GV++EGE+ARCK +ICDP YVKD+V+K+G
Sbjct: 238 FARLSAIYGGTYMLNKPIEEIIV-QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+TT
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VETK P +E++P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDD 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR TGSEFDF +++ K
Sbjct: 417 IKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 267 bits (683), Expect = 2e-71
Identities = 125/201 (62%), Positives = 163/201 (81%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK E+I+ ++GKV+GV++EGE+ARCK +ICDP YVKD+V+K+G
Sbjct: 238 FARLSAIYGGTYMLNKPIEEIIV-QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+TT
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VETK P +E++P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDD 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR TGSEFDF +++ K
Sbjct: 417 IKDIYKRMTGSEFDFEEMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 266 bits (679), Expect = 6e-71
Identities = 128/201 (63%), Positives = 157/201 (78%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP YV D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR GS FDF ++ K
Sbjct: 417 IKDIYKRMAGSAFDFENMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 265 bits (678), Expect = 7e-71
Identities = 126/201 (62%), Positives = 162/201 (80%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK E+I+ ++GKVIGV++EGE+ARCK +ICDP YVKD+V+K+G
Sbjct: 238 FARLSAIYGGTYMLNKPIEEIIV-QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+TT
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VETK P +E++P L LL IEQ F + SDL P D G ES++F+S +YDATTHFETTC D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDD 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ ++YKR TGSEFDF +++ K
Sbjct: 417 IKNIYKRMTGSEFDFEEMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 265 bits (677), Expect = 9e-71
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP Y+ D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR GS FDF ++ K
Sbjct: 417 IKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 265 bits (677), Expect = 9e-71
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP Y+ D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR GS FDF ++ K
Sbjct: 417 IKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 265 bits (676), Expect = 1e-70
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP Y+ D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR GS FDF ++ K
Sbjct: 417 IKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 265 bits (676), Expect = 1e-70
Identities = 126/201 (62%), Positives = 157/201 (78%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP Y+ D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR G+ FDF ++ K
Sbjct: 417 IKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 265 bits (676), Expect = 1e-70
Identities = 126/201 (62%), Positives = 157/201 (78%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK + I+ E+GKV+GV++EGEVARCK +ICDP Y+ D+V+K G
Sbjct: 238 FARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +TT
Sbjct: 297 VIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC D
Sbjct: 357 VETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCND 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ D+YKR G+ FDF ++ K
Sbjct: 417 IKDIYKRMAGTAFDFENMKRK 437
>sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 264 bits (675), Expect = 2e-70
Identities = 126/201 (62%), Positives = 161/201 (80%)
Frame = +3
Query: 48 FARLSAVFGGTYMLNKQFEKIVYDESGKVIGVQAEGEVARCKAVICDPGYVKDKVKKIGS 227
FARLSA++GGTYMLNK E+I+ ++GKVIGV++EGE+ARCK +ICDP YVKD+V+K+G
Sbjct: 238 FARLSAIYGGTYMLNKPIEEIIV-QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296
Query: 228 VIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVATT 407
VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+TT
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356
Query: 408 VETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTCRD 587
VETK P +E++P L LL IEQ F + SDL P D G ES +F+S +YDATTHFETTC D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDD 416
Query: 588 VLDVYKRYTGSEFDFGKVQSK 650
+ ++YKR TGSEFDF +++ K
Sbjct: 417 IKNIYKRMTGSEFDFEEMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,617,208
Number of Sequences: 369166
Number of extensions: 1874347
Number of successful extensions: 5831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5813
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)