Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_E04
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 56 2e-08
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 51 1e-06
sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R) 32 0.35
sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R) 32 0.35
sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor 31 0.78
sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor 31 0.78
sp|P98118|PROS_RABIT Vitamin K-dependent protein S precursor 31 1.0
sp|P07225|PROS_HUMAN Vitamin K-dependent protein S precursor 31 1.0
sp|Q28520|PROS_MACMU Vitamin K-dependent protein S precursor 31 1.0
sp|P07224|PROS_BOVIN Vitamin K-dependent protein S precursor 30 1.7
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 LCGCFDDCGTCLL-TYFVPCYLIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERR 177
+C CF DCG CL T+ PC +G A + C LCG + +R+ R R
Sbjct: 30 MCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA---------MRTLYRTRY 78
Query: 178 NISGNIFEDFICALCCNCCIVAQMHQEV 261
I G+I +D++ LCC C + Q+ +++
Sbjct: 79 GIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 LCGCFDDCGTCLLTYFVPCY-LIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERR 177
LC CF DCG CL F C+ +G A + C LCG +R+ R R
Sbjct: 27 LCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGTTVA---------MRTLYRTRY 75
Query: 178 NISGNIFEDFICALCCNCCIVAQMHQEV 261
I G+I +D++ L C C V Q+ +++
Sbjct: 76 GIPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R)
Length = 363
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +3
Query: 3 LWVF**LWNMFINIFCTVLFNWKRCRSRW*QLFSLWFSGFICWT---------LYYCIC 152
+WVF L ++ + +F V W C W + LW + FI +T L C+C
Sbjct: 161 VWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 219
>sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R)
Length = 362
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +3
Query: 3 LWVF**LWNMFINIFCTVLFNWKRCRSRW*QLFSLWFSGFICWT---------LYYCIC 152
+WVF L ++ + +F V W C W + LW + FI +T L C+C
Sbjct: 160 VWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 218
>sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor
Length = 675
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P TD+FY K
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYFYPK 84
>sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor
Length = 675
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P TD+FY K
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYFYPK 84
>sp|P98118|PROS_RABIT Vitamin K-dependent protein S precursor
Length = 646
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P TD+FY K
Sbjct: 25 LERECIEELCNKEE-AREVFENDPETDYFYPK 55
>sp|P07225|PROS_HUMAN Vitamin K-dependent protein S precursor
Length = 676
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P TD+FY K
Sbjct: 54 LERECIEELCNKEE-AREVFENDPETDYFYPK 84
>sp|Q28520|PROS_MACMU Vitamin K-dependent protein S precursor
Length = 649
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P TD+FY K
Sbjct: 27 LERECIEELCNKEE-AREVFENDPETDYFYPK 57
>sp|P07224|PROS_BOVIN Vitamin K-dependent protein S precursor
Length = 675
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 236 LLHKCIKRLCQWEDRAWQLNENKPNTDFFYIK 331
L +CI+ LC E+ A ++ EN P T++FY K
Sbjct: 54 LERECIEELCNKEE-AREIFENNPETEYFYPK 84
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,500,936
Number of Sequences: 369166
Number of extensions: 751159
Number of successful extensions: 2067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2064
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)