Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D19
(747 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 321 1e-87
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 321 1e-87
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 317 2e-86
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 312 5e-85
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 302 5e-82
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 301 2e-81
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 301 2e-81
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 298 1e-80
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 256 3e-68
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 254 2e-67
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 321 bits (822), Expect = 1e-87
Identities = 155/217 (71%), Positives = 177/217 (81%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +G
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG 183
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK +KERYSYVCPD+ KEF
Sbjct: 184 YVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFN 243
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD+D KWIK + + +FS DVGYE+FLGPE+FF PEF N DF IS+VVD V
Sbjct: 244 KYDTDGSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 303
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQ+CPID RRPLY NIV+SG S+MF+ RR + L+
Sbjct: 304 IQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 321 bits (822), Expect = 1e-87
Identities = 155/217 (71%), Positives = 177/217 (81%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +G
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG 183
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK +KERYSYVCPD+ KEF
Sbjct: 184 YVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFN 243
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD+D KWIK + + +FS DVGYE+FLGPE+FF PEF N DF IS+VVD V
Sbjct: 244 KYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 303
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQ+CPID RRPLY NIV+SG S+MF+ RR + L+
Sbjct: 304 IQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 317 bits (812), Expect = 2e-86
Identities = 153/217 (70%), Positives = 176/217 (81%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +G
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG 183
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGRDIT+F QQLLRERE IPP+ S+E AK +KER+SYVCPD+ KEF
Sbjct: 184 YVIGSCIKHIPIAGRDITYFTQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFN 243
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD+D KWIK + + +F+ DVGYE+FLGPE+FF PEF N DF IS+VVD V
Sbjct: 244 KYDTDGSKWIKQYTGINAITKKEFTIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 303
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQ+CPID RRPLY NIV+SG S+MF+ RR + L+
Sbjct: 304 IQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 312 bits (800), Expect = 5e-85
Identities = 150/217 (69%), Positives = 176/217 (81%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFETFNVPGLYIAVQAVLALAASW SR A ERTLTG V+DSGDGVTHVIPV +G
Sbjct: 124 EYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEG 183
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGR+IT FIQ LLRERE IPP+ S+E AK IKE++ Y+CPDIAKEFA
Sbjct: 184 YVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFA 243
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD++P KWI++ + F+ DVGYE+FLGPE+FF PEF N DF +S++VD V
Sbjct: 244 KYDTEPGKWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNV 303
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQ+CPID RRPLYNNIV+SG S+MFK RR + ++
Sbjct: 304 IQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIK 340
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 302 bits (774), Expect = 5e-82
Identities = 147/217 (67%), Positives = 177/217 (81%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
EFTAEIMFETFNVPGLYIAVQAVLALAASWTS+ A E+TLTGTVIDSGDGVTHVIP+ +G
Sbjct: 125 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNA-EKTLTGTVIDSGDGVTHVIPISEG 183
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS+IKHIPIAGRDI+ ++QQ++RERE IPP S+E AK++KE+YSYVCPDI KEF
Sbjct: 184 YVIGSSIKHIPIAGRDISSYVQQIMREREPNIPPAESLEIAKRVKEQYSYVCPDIVKEFG 243
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYDS+P+KWIK+ S FS+DVGYE+FLGPE+FF PE ++D+ T + VVD
Sbjct: 244 KYDSEPDKWIKTINAQDSVTKKPFSYDVGYERFLGPELFFNPEIASSDYLTPLPKVVDDT 303
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQSCPID RR LY NIV+SG S+MFK +R + ++
Sbjct: 304 IQSCPIDCRRGLYKNIVLSGGSTMFKDFGKRLQRDVK 340
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 301 bits (770), Expect = 2e-81
Identities = 144/219 (65%), Positives = 171/219 (78%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFE+FNVPGLYIAVQAVLAL ASW SR ANER+LTG VIDSGDGVTH IPV DG
Sbjct: 131 EYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADG 190
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGRDIT+FIQ LLR+RE IP + S E AK IKE++ YVCPD+ KEF
Sbjct: 191 YVIGSCIKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFV 250
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD+D KW++++ S F+ DVGYE+FLGPE+FF PEF N +F T ISD +DT+
Sbjct: 251 KYDTDAAKWLRTYDGINSITKKPFNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTL 310
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLENV 673
IQ CPID RR LY NIV+SG S+MFK R+ + ++ +
Sbjct: 311 IQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRL 349
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 301 bits (770), Expect = 2e-81
Identities = 145/219 (66%), Positives = 171/219 (78%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFE+FNVPGLYIAVQAVLAL ASW SR A++R+LTG VIDSGDGVTH IPV DG
Sbjct: 132 EYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIPVADG 191
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS IKHIPIAGRDIT+FIQ LLRERE IP + S E AK IKE++ YVCPD+ KEF
Sbjct: 192 YVIGSCIKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFV 251
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD+D KW++++ S FS DVGYE+FLGPE+FF PEF N DF T ISD +DT+
Sbjct: 252 KYDTDSSKWLRTYDGINSITKRPFSVDVGYERFLGPEIFFHPEFCNPDFTTPISDTIDTL 311
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLENV 673
IQ CPID RR LY NIV+SG S+MFK R+ + ++ +
Sbjct: 312 IQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRL 350
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 298 bits (762), Expect = 1e-80
Identities = 143/217 (65%), Positives = 174/217 (80%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E+TAEIMFETFNVPGLYIAVQAVLALAASWTS+ E+TLTGTVIDSGDGVTHVIPV +G
Sbjct: 132 EYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEG 191
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS+IKHIP+AGRDIT F+ QLLRER IPP ++E AK+IKE +SYVCPDI KEF
Sbjct: 192 YVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFK 251
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD++P+KW K+++ S ++ DVGYE+FLGPE+FF PE ++DF T + VVD
Sbjct: 252 KYDTEPDKWFKTYEGIESVGKKPYNVDVGYERFLGPEIFFNPEIFSSDFLTPLPKVVDET 311
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLE 667
IQSCPID+RR LY NIV+SG S+MFK +R + ++
Sbjct: 312 IQSCPIDTRRGLYKNIVLSGGSTMFKDFGKRLQRDIK 348
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 256 bits (655), Expect = 3e-68
Identities = 132/219 (60%), Positives = 159/219 (72%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E AEI FE+FN GLYIAVQAVLALAASWTS +R+LTGTVIDSGDGVTHVIPV +G
Sbjct: 162 EQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVIDSGDGVTHVIPVAEG 221
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGSAIK+IPIAGRDIT FIQ LLRER D S+ A++IK+ Y YVCPDI KEF
Sbjct: 222 YVIGSAIKNIPIAGRDITLFIQSLLRERGEA---DTSLRTAEKIKQEYCYVCPDIVKEFN 278
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
K+D DP K+ + + K D+GYE+FL PE+FF PE ++DF T + VVD
Sbjct: 279 KFDKDPSKFAQ-FVVENQEKTRRKVVDIGYERFLAPEIFFNPEIASSDFLTPLPTVVDQT 337
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLENV 673
IQ+CPID R+ LYNNIV+SG S+MFK RR + L+++
Sbjct: 338 IQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSI 376
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 254 bits (649), Expect = 2e-67
Identities = 130/219 (59%), Positives = 161/219 (73%)
Frame = +2
Query: 17 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 196
E TAEI FE+FN GLYIAVQAVLALAASWTS +R+LTGTVIDSGDGVTHVIPV +G
Sbjct: 149 ENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEG 208
Query: 197 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 376
YVIGS+IK IPIAGRDIT+F+Q LLR+R PD S++ A++IKE Y YVCPDI KEFA
Sbjct: 209 YVIGSSIKSIPIAGRDITYFVQSLLRDRG---EPDSSLKTAQEIKEEYCYVCPDIVKEFA 265
Query: 377 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 556
KYD D +++K + + DVGYE+F+ PE+FF PE ++DF T + VVD V
Sbjct: 266 KYDRDRSRFLKHTITQPGGR--QVTVDVGYERFMAPEIFFNPEIYSSDFLTPLPVVVDGV 323
Query: 557 IQSCPIDSRRPLYNNIVVSGDSSMFKHLDRRYEETLENV 673
IQS PID RR LY NIV+SG S+++K RR + ++ +
Sbjct: 324 IQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQL 362
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,956,451
Number of Sequences: 369166
Number of extensions: 2004873
Number of successful extensions: 6847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6206
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)