Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D08
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 352 6e-97
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 352 8e-97
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 351 1e-96
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 350 3e-96
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 319 6e-87
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 318 1e-86
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 317 4e-86
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 294 2e-79
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 289 8e-78
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 282 1e-75
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 352 bits (904), Expect = 6e-97
Identities = 164/287 (57%), Positives = 216/287 (75%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXX 217
HPDKNP+ G+KFK+ISQA+EVLAD KKR++YD GGEQA+KEGG GF +
Sbjct: 34 HPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93
Query: 218 XXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCN 397
V+HQL+VTL++LY G TRKLA+QKNVICDKC GRGGK+GAV+ C
Sbjct: 94 GGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCP 151
Query: 398 SCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVH 577
+CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +DRCK C G+K+VREKK+LEVH
Sbjct: 152 NCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVH 211
Query: 578 IDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLC 757
IDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL M + LV++LC
Sbjct: 212 IDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALC 271
Query: 758 GFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
GF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+G
Sbjct: 272 GFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKG 318
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 352 bits (903), Expect = 8e-97
Identities = 166/287 (57%), Positives = 216/287 (75%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXX 217
HPDKNPD G+KFK ISQA+EVL+DPKKR +YD GGEQA+KEGG S +
Sbjct: 34 HPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFF 93
Query: 218 XXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCN 397
V+HQL+VTL++LY G T+KLA+QKNVIC+KC G GGK+G+V+KC
Sbjct: 94 GGGGRMARERRGKN-VVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCP 152
Query: 398 SCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVH 577
C+G G+++HI+Q+GPGMVQQ+QT C CKG+ E IN +DRC+ C G KV+REKK++EVH
Sbjct: 153 LCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKKIIEVH 212
Query: 578 IDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLC 757
++KGM DGQ+I F+GEGDQEP LEPGD+ IVL++K H+VF R+ DLI MK+ L ++LC
Sbjct: 213 VEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALC 272
Query: 758 GFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
GFK+TI TLDNRILV+ +K GEVIK+ + R + +EGMP YK+P E+G
Sbjct: 273 GFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKG 319
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 351 bits (901), Expect = 1e-96
Identities = 163/287 (56%), Positives = 216/287 (75%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXX 217
HPDKNP+ G+KFK+ISQA+EVL+D KKR++YD GGEQA+KEGG GF +
Sbjct: 34 HPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93
Query: 218 XXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCN 397
V+HQL+VTL++LY G TRKLA+QKNVICDKC GRGGK+GAV+ C
Sbjct: 94 GGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCP 151
Query: 398 SCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVH 577
+CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I+ +DRCK C G+K+VREKK+LEVH
Sbjct: 152 NCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVH 211
Query: 578 IDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLC 757
IDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K H VFTR+ DL M + LV++LC
Sbjct: 212 IDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALC 271
Query: 758 GFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
GF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+G
Sbjct: 272 GFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKG 318
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 350 bits (898), Expect = 3e-96
Identities = 166/287 (57%), Positives = 215/287 (74%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXX 217
HPDKNPD G+KFK ISQA+EVL+DPKKR IYD GGEQA+KEGG S +
Sbjct: 34 HPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFF 93
Query: 218 XXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCN 397
V+HQL+VTL++LY G T+KLA+QKNVIC+KC G GGK+G+V+KC
Sbjct: 94 GGGGRMTRERRGKN-VVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCP 152
Query: 398 SCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVH 577
C+G G++VHI+Q+GPGMVQQ+QT C CKG+ E IN +DRC+ C G KV REKK++EVH
Sbjct: 153 LCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVTREKKIIEVH 212
Query: 578 IDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLC 757
++KGM DGQ+I F+GEGDQEP L+PGD+ IVL++K H+VF R+ DLI MK+ L ++LC
Sbjct: 213 VEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALC 272
Query: 758 GFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
GFK+TI TLD+R+LV+ +K GEVIK+ + + I NEGMP YK+P E+G
Sbjct: 273 GFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKG 319
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 319 bits (818), Expect = 6e-87
Identities = 155/292 (53%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-----FHNXXXXX 202
HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G F +
Sbjct: 36 HPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGG 95
Query: 203 XXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGA 382
++H L V+L++LY G T KL + KNV+C C+G+GGK GA
Sbjct: 96 LFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
Query: 383 VQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKK 562
VQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKKCEG+KV++E K
Sbjct: 156 VQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVK 215
Query: 563 VLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDL 742
+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF R DL K+ L
Sbjct: 216 ILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGL 275
Query: 743 VDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
V++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PFE+G
Sbjct: 276 VEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKG 327
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 318 bits (816), Expect = 1e-86
Identities = 155/292 (53%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-----FHNXXXXX 202
HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G F +
Sbjct: 36 HPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGG 95
Query: 203 XXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGA 382
++H L V+L++LY G T KL + KNV+C C+G+GGK GA
Sbjct: 96 LFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
Query: 383 VQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKK 562
VQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKKCEG+KV++E K
Sbjct: 156 VQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVK 215
Query: 563 VLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDL 742
+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++L+EK H VF R DL K+ L
Sbjct: 216 ILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGL 275
Query: 743 VDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
V++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PFE+G
Sbjct: 276 VEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKG 327
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 317 bits (811), Expect = 4e-86
Identities = 154/292 (52%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSG-----FHNXXXXX 202
HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GEQ L+EG G G F +
Sbjct: 36 HPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGG 95
Query: 203 XXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGA 382
++H L V+L++LY G T KL + KNV+C C+G+GGK GA
Sbjct: 96 LFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGA 155
Query: 383 VQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKK 562
VQKC++CRG GV + IRQL PGMVQQMQ+ C C GE EVINE+DRCKKCEG+KV++E K
Sbjct: 156 VQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVK 215
Query: 563 VLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDL 742
+LEVH+DKGM GQ+I F GE DQ PG+EPGDI + ++EK H VF R DL K+ L
Sbjct: 216 ILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGL 275
Query: 743 VDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
V++LCGF+ T LD R +VV+ PG+VI+ R + EGMP+Y++PFE+G
Sbjct: 276 VEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKG 327
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 294 bits (753), Expect = 2e-79
Identities = 145/293 (49%), Positives = 197/293 (67%), Gaps = 6/293 (2%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGFHNXXXXXXXXX 214
HPDK D +KFKE++QA++VL+DP+KR+IYD GE ALKEG GG G H+
Sbjct: 20 HPDKGGDP-EKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFF 78
Query: 215 XXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEG 379
V+H L V+L+ELY G ++KL++ +NVIC KCNG+G K G
Sbjct: 79 GGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSG 138
Query: 380 AVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREK 559
A +C SC+G G++V IRQLGPGM+QQMQ C CKG E+IN++DRC C+G+KVV+EK
Sbjct: 139 ASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEK 198
Query: 560 KVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLD 739
KVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK DL Y L
Sbjct: 199 KVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRKGDDLFYKHTLS 258
Query: 740 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
L ++LCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G
Sbjct: 259 LTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRG 311
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 289 bits (739), Expect = 8e-78
Identities = 142/293 (48%), Positives = 194/293 (66%), Gaps = 6/293 (2%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGFHNXXXXXXXXX 214
HPDK D +KFKEI QA+EVL DP+KR+IYD GE+ LKEG GG G H+
Sbjct: 41 HPDKGGDP-EKFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFF 99
Query: 215 XXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEG 379
V+H L V+L++LY G ++KL++ +NV+C KC G+G K G
Sbjct: 100 GGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCKGKGSKSG 159
Query: 380 AVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREK 559
A C SC+G G++V IRQLGPGM+QQMQ C CKG E+I+++DRC +C+G+KVV++K
Sbjct: 160 ASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKDRCPQCKGEKVVQQK 219
Query: 560 KVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLD 739
KVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK DL Y L
Sbjct: 220 KVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFYEHSLS 279
Query: 740 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
L ++LCGF+ +T LDNR L++++ PGEVIK +++ I++EGMP Y+ PF +G
Sbjct: 280 LTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRG 332
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 282 bits (721), Expect = 1e-75
Identities = 141/292 (48%), Positives = 190/292 (65%), Gaps = 5/292 (1%)
Frame = +2
Query: 38 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEGGGDSGFHNXXXXXXXXXX 217
HPDK D +KFKE++QA+EVL+DP+KR+IYD GE ALKEG G G H+
Sbjct: 40 HPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFQSFFG 98
Query: 218 XXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEGA 382
VIH L V+L++LY G ++KL++ +NVIC KC G+G K GA
Sbjct: 99 GSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGA 158
Query: 383 VQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREKK 562
KC C+G G++V IR LGP M+QQMQ C CKG E IN++DRC +C+G+KVV+EKK
Sbjct: 159 SMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCSQCKGEKVVQEKK 218
Query: 563 VLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLDL 742
VLEV ++KGM + Q+I F GE D+ P GDI VL++K H F RK DL L L
Sbjct: 219 VLEVIVEKGMQNAQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSL 278
Query: 743 VDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQG 898
V+SLCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G
Sbjct: 279 VESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPFMKG 330
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,199,830
Number of Sequences: 369166
Number of extensions: 1778283
Number of successful extensions: 6205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5563
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)