Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C18
(506 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94757|TCPA_SCHMA T-complex protein 1, alpha subunit (TC... 209 2e-54
sp|P17987|TCPA_HUMAN T-complex protein 1, alpha subunit (TC... 202 3e-52
sp|P28480|TCPA_RAT T-complex protein 1, alpha subunit (TCP-... 200 1e-51
sp|P18279|TCPA_CRIGR T-complex protein 1, alpha subunit (TC... 200 1e-51
sp|Q9W790|TCPA_PALPA T-complex protein 1, alpha subunit (TC... 200 2e-51
sp|Q9XT06|TCPA_MONDO T-complex protein 1, alpha subunit (TC... 198 5e-51
sp|P12613|TCPA_DROME T-complex protein 1, alpha subunit (TC... 198 7e-51
sp|P11984|TCPA1_MOUSE T-complex protein 1, alpha subunit A ... 197 1e-50
sp|P11983|TCPA2_MOUSE T-complex protein 1, alpha subunit B ... 193 2e-49
sp|P41988|TCPA_CAEEL T-complex protein 1, alpha subunit (TC... 192 3e-49
>sp|Q94757|TCPA_SCHMA T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 545
Score = 209 bits (533), Expect = 2e-54
Identities = 106/168 (63%), Positives = 126/168 (75%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQK K+KLGVQ++V DP +L+ GANVILTTGGI
Sbjct: 231 IAFLDFSLQKVKMKLGVQVVVKDPAQLEAIRQREADITKERIQKILNAGANVILTTGGID 290
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
+CMKYFVE AMA+RRCKKVDLK +A+ATGG L VSLA M+GDE FDP LG AE+VSQ
Sbjct: 291 DLCMKYFVEVNAMAVRRCKKVDLKNMAKATGGQLIVSLADMEGDEVFDPTKLGNAEEVSQ 350
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+++RG K +AS+ILRGANDFYVDEMERSLHD+L VVKR
Sbjct: 351 ERICDDELIILRGPKVHPSASIILRGANDFYVDEMERSLHDALLVVKR 398
>sp|P17987|TCPA_HUMAN T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 556
Score = 202 bits (515), Expect = 3e-52
Identities = 103/168 (61%), Positives = 127/168 (75%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFVEA AMA+RR K DLKRIA+A+G + +LA ++G+E F+ A LG AE+V Q
Sbjct: 294 DMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|P28480|TCPA_RAT T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 556
Score = 200 bits (509), Expect = 1e-51
Identities = 102/168 (60%), Positives = 126/168 (75%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFVEA AMA+RR K DLKRIA+A+G + +LA ++G+E F+ LG AE+V Q
Sbjct: 294 DMCLKYFVEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|P18279|TCPA_CRIGR T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) (65
kDa antigen)
Length = 556
Score = 200 bits (509), Expect = 1e-51
Identities = 102/168 (60%), Positives = 126/168 (75%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIEKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFVEA AMA+RR K DLKRIA+A+G + +LA ++G+E F+ LG AE+V Q
Sbjct: 294 DMCLKYFVEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|Q9W790|TCPA_PALPA T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 559
Score = 200 bits (508), Expect = 2e-51
Identities = 99/168 (58%), Positives = 128/168 (76%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 237 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGID 296
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFV+A AMA+RR K DLKRIA+A+G + +LA ++G+E+F+ + LG AE+V Q
Sbjct: 297 DMCLKYFVDAGAMAVRRVLKKDLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQ 356
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ER+CD+EL+LI+ KAR++AS+ILRGANDF DEMERS+HD+LCVVKR
Sbjct: 357 ERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKR 404
>sp|Q9XT06|TCPA_MONDO T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 557
Score = 198 bits (504), Expect = 5e-51
Identities = 99/168 (58%), Positives = 128/168 (76%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRKREADITKERIQKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFVE+ +A+RR K DLKRIA+A+G + +LA+++G+E+F+ + LG AE+V Q
Sbjct: 294 DMCLKYFVESMTIAVRRVLKRDLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|P12613|TCPA_DROME T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 557
Score = 198 bits (503), Expect = 7e-51
Identities = 97/168 (57%), Positives = 124/168 (73%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+K+GVQ+L+ DP+KL+ TG NV+L +GG+
Sbjct: 237 IACLDFSLQKTKMKMGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVD 296
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
+CMKYFVEA AMA+RR KK DLK IA+ATG SL MDG+E+FD + +G A +V+Q
Sbjct: 297 DLCMKYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQ 356
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+G KAR+AAS+ILRG NDFY DEMERS+HD+LCVVKR
Sbjct: 357 ERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKR 404
>sp|P11984|TCPA1_MOUSE T-complex protein 1, alpha subunit A (TCP-1-alpha) (CCT-alpha)
(Tailless complex polypeptide 1A) (TCP-1-A)
Length = 556
Score = 197 bits (501), Expect = 1e-50
Identities = 100/168 (59%), Positives = 125/168 (74%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
MC+KYFVEA AMA+RR K DLK +A+A+G + +LA ++G+E F+ LG AE+V Q
Sbjct: 294 DMCLKYFVEAGAMAVRRVLKRDLKCVAKASGATILSTLANLEGEETFEVTMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|P11983|TCPA2_MOUSE T-complex protein 1, alpha subunit B (TCP-1-alpha) (CCT-alpha)
(Tailless complex polypeptide 1B) (TCP-1-B)
Length = 556
Score = 193 bits (491), Expect = 2e-49
Identities = 99/168 (58%), Positives = 124/168 (73%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +LQKTK+KLGVQ+++TDPEKLD TGANVILTTGGI
Sbjct: 234 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGID 293
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
M +KYFVEA AMA+RR K DLK +A+A+G + +LA ++G+E F+ LG AE+V Q
Sbjct: 294 DMYLKYFVEAGAMAVRRVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQ 353
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERICD+EL+LI+ KAR++AS+ILRGANDF DEMERSLHD+LCVVKR
Sbjct: 354 ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKR 401
>sp|P41988|TCPA_CAEEL T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha)
Length = 549
Score = 192 bits (489), Expect = 3e-49
Identities = 95/168 (56%), Positives = 125/168 (74%)
Frame = +2
Query: 2 VALLDLNLQKTKLKLGVQILVTDPEKLDXXXXXXXXXXXXXXXXXXXTGANVILTTGGIV 181
+A LD +L K K+ LG+ ++V DP KL+ GANV+LTTGGI
Sbjct: 237 IACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANVVLTTGGID 296
Query: 182 GMCMKYFVEAKAMAIRRCKKVDLKRIAEATGGVLGVSLATMDGDEAFDPAYLGYAEDVSQ 361
+C+K FVE+ AMA+RRCKK DLKRIA+ATG L VSLAT++GDEAFD + LG+A+++ Q
Sbjct: 297 DLCLKQFVESGAMAVRRCKKSDLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQ 356
Query: 362 ERICDEELVLIRGCKARSAASVILRGANDFYVDEMERSLHDSLCVVKR 505
ERI D+EL+LI+G K+R+A+S+ILRGAND +DEMERS+HDSLCVV+R
Sbjct: 357 ERISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRR 404
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,552,382
Number of Sequences: 369166
Number of extensions: 1095036
Number of successful extensions: 3410
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3325
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)