Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C09
(523 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate... 94 2e-19
sp|P40792|RAC1_DROME Ras-related protein Rac1 93 4e-19
sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substra... 92 1e-18
sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substra... 91 1e-18
sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substra... 91 2e-18
sp|P48554|RAC2_DROME Ras-related protein Rac2 90 3e-18
sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substra... 90 3e-18
sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxi... 89 6e-18
sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substra... 89 8e-18
sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse... 77 2e-14
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
protein TC25)
sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
Length = 192
Score = 94.0 bits (232), Expect = 2e-19
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPRKKTCKF 185
++++ TPI YPQGL +AKEIGAVKYLECSALTQ+GLK+VFDEAIRAVLCP P +K+ K
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
Query: 186 L 188
L
Sbjct: 190 L 190
>sp|P40792|RAC1_DROME Ras-related protein Rac1
Length = 192
Score = 92.8 bits (229), Expect = 4e-19
Identities = 45/63 (71%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCP--KPPRKKTC 179
RD++ PI YPQGL +AKEIGAVKYLECSALTQKGLK+VFDEAIR+VLCP +P K+ C
Sbjct: 130 RDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKC 189
Query: 180 KFL 188
L
Sbjct: 190 ALL 192
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/63 (68%), Positives = 53/63 (84%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKP--PRKKTC 179
++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+P P+K+ C
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRAC 189
Query: 180 KFL 188
L
Sbjct: 190 SLL 192
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 91.3 bits (225), Expect = 1e-18
Identities = 43/63 (68%), Positives = 53/63 (84%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKP--PRKKTC 179
++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+P P+K+ C
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRPC 189
Query: 180 KFL 188
L
Sbjct: 190 SIL 192
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
Length = 192
Score = 90.5 bits (223), Expect = 2e-18
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPRK 170
RD++ PI YPQGL +A+EIG+VKYLECSALTQ+GLK+VFDEAIRAVLCP P +K
Sbjct: 130 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
>sp|P48554|RAC2_DROME Ras-related protein Rac2
Length = 192
Score = 90.1 bits (222), Expect = 3e-18
Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCP--KPPRKKTC 179
+D++ TPI YPQGL +AKEI AVKYLECSALTQKGLK+VFDEAIR+VLCP + P++ C
Sbjct: 130 KDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKC 189
Query: 180 KFL 188
L
Sbjct: 190 ALL 192
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
protein) (GX)
Length = 192
Score = 90.1 bits (222), Expect = 3e-18
Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPR--KKTC 179
++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+P R K+ C
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRAC 189
Query: 180 KFL 188
L
Sbjct: 190 SLL 192
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
Length = 192
Score = 89.0 bits (219), Expect = 6e-18
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPRKKTCKF 185
++++ TPI YPQGL +AKE+GAVKYLEC ALT++GLK+VFDEAIRAVLCP P +K+ K
Sbjct: 130 KEKKLTPITYPQGLAMAKEMGAVKYLECLALTRRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
Query: 186 L 188
L
Sbjct: 190 L 190
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
protein)
Length = 192
Score = 88.6 bits (218), Expect = 8e-18
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPR--KKTC 179
++++ PI YPQGL LAK+I +VKYLECSALTQ+GLK+VFDEAIRAVLCP+P R K+ C
Sbjct: 130 KEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRPC 189
Query: 180 KFL 188
L
Sbjct: 190 SLL 192
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
(CErac1)
Length = 191
Score = 77.4 bits (189), Expect = 2e-14
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +3
Query: 6 RDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPKPPRKKT 176
R+RR P++ QG V+AKEI AVKYLECSALTQ+GLK VFDEAIRAVL P KK+
Sbjct: 130 RERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTPPQRAKKS 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,493,755
Number of Sequences: 369166
Number of extensions: 912171
Number of successful extensions: 2281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2279
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)