Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C08
(670 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 74 3e-13
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 70 7e-12
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 69 9e-12
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 69 1e-11
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 69 1e-11
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 69 1e-11
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 69 1e-11
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 69 1e-11
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 68 2e-11
sp|Q9Z2C8|YBOX2_MOUSE Y-box binding protein 2 (Germ cell-sp... 68 2e-11
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 73.9 bits (180), Expect = 3e-13
Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
QV+G VKWF+ K+GYGFI+ DD +D+FVH DGE+V FD+V+
Sbjct: 32 QVSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVE 89
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G +V G K
Sbjct: 90 GEKGNEAANVTGPEGSNVQGSK 111
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 69.7 bits (169), Expect = 7e-12
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
QV G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 93 QVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 150
Query: 170 GAKGLEARNVTGPNGGDVIGGKPYEP 247
G KG EA NVTGP GG + G Y P
Sbjct: 151 GEKGAEATNVTGP-GGVPVKGSRYAP 175
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 69.3 bits (168), Expect = 9e-12
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
QV G VKWF+ +NGYGFI+ +D + +D+FVH DGE V FD+V+
Sbjct: 41 QVQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVE 98
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G +
Sbjct: 99 GEKGAEAANVTGPGGVPVKGSR 120
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 68.9 bits (167), Expect = 1e-11
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
QV G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 41 QVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVE 98
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G +
Sbjct: 99 GEKGAEAANVTGPGGVPVKGSR 120
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 36 KVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 93
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G K
Sbjct: 94 GEKGAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 56 KVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 113
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G K
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 58 KVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 115
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G K
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 55 KVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 112
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP G V G K
Sbjct: 113 GEKGAEAANVTGPGGVPVQGSK 134
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 67.8 bits (164), Expect = 2e-11
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
+V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 82 KVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 139
Query: 170 GAKGLEARNVTGPNGGDVIGGK 235
G KG EA NVTGP+G V G +
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>sp|Q9Z2C8|YBOX2_MOUSE Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(FRGY2 homolog)
Length = 360
Score = 67.8 bits (164), Expect = 2e-11
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 2 QVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQ 169
QV G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+
Sbjct: 95 QVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 152
Query: 170 GAKGLEARNVTGPNGGDVIGGKPYEP 247
G KG A NVTGP GG + G Y P
Sbjct: 153 GEKGARAANVTGP-GGVPVKGSRYAP 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,666,290
Number of Sequences: 369166
Number of extensions: 788827
Number of successful extensions: 2907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)