Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C07
(246 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 45 5e-05
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 45 5e-05
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 45 5e-05
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 41 0.001
sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1) 40 0.002
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 40 0.002
sp|P02827|HSP70_XENLA Heat shock 70 kDa protein (HSP70) 39 0.003
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 39 0.003
sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein 39 0.004
sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70) 39 0.004
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 FEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 FEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 FEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQ-----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
+++H KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 YEHHQKELEKVCNPIITKLYQGAGGMPGGMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1)
Length = 639
Score = 40.0 bits (92), Expect = 0.002
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F + KELEKVCNPI++K+YQ QGPT+EEVD
Sbjct: 594 FQHKQKELEKVCNPIISKLYQ---------GGMPSGSCREQARADSQGPTIEEVD 639
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 FEHQQKELEKVCNPIITKLYQSAGGMPGGMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P02827|HSP70_XENLA Heat shock 70 kDa protein (HSP70)
Length = 647
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
+ + K+LEKVC PI+TK+YQ GPT+EEVD
Sbjct: 593 YAFQQKDLEKVCQPIITKLYQGGVPGGVPGGMPGSSCGAQARQGGNSGPTIEEVD 647
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQ----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
F++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 592 FEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 650
>sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein
Length = 654
Score = 38.9 bits (89), Expect = 0.004
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQ-GPTVEEVD 167
+++ KELEKVCNPI+TK+YQ GPT+EEVD
Sbjct: 599 YEHKQKELEKVCNPIITKLYQAGGGMPGGMPGGMPGGMPGSGSKASSGGPTIEEVD 654
>sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70)
Length = 644
Score = 38.9 bits (89), Expect = 0.004
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 3 FDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 167
+++ KELEKVC PI+TK+YQ QGPT+EE+D
Sbjct: 594 YEHQLKELEKVCQPIITKLYQ----QGGMPTGCCGDQARTSSGDSSQGPTIEEID 644
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,094,574
Number of Sequences: 369166
Number of extensions: 70316
Number of successful extensions: 322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)