Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C05
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 229 5e-60
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 228 2e-59
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 228 2e-59
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 228 2e-59
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 228 2e-59
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 227 3e-59
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 226 5e-59
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 226 5e-59
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 219 6e-57
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 183 6e-46
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 229 bits (585), Expect = 5e-60
Identities = 106/133 (79%), Positives = 125/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+E+++DD++KLTLHGL+QHY+ +KENEKN+KLFELLD L+FNQV++FVKSVQRC+AL
Sbjct: 243 PMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQ 302
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 303 LLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMP 362
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 363 EDSDTYLHRVARA 375
Score = 57.0 bits (136), Expect = 6e-08
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH KQVMMFSATLSK+IRP+CKKFMQD
Sbjct: 215 TPHGKQVMMFSATLSKDIRPVCKKFMQD 242
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 228 bits (581), Expect = 2e-59
Identities = 107/133 (80%), Positives = 125/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 366 EDSDTYLHRVARA 378
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 218 TPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 228 bits (581), Expect = 2e-59
Identities = 107/133 (80%), Positives = 125/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 366 EDSDTYLHRVARA 378
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 218 TPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 228 bits (581), Expect = 2e-59
Identities = 107/133 (80%), Positives = 125/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 366 EDSDTYLHRVARA 378
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 218 TPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 228 bits (581), Expect = 2e-59
Identities = 107/133 (80%), Positives = 125/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 366 EDSDTYLHRVARA 378
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 218 TPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 227 bits (578), Expect = 3e-59
Identities = 106/133 (79%), Positives = 126/133 (94%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQVI+FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQ 304
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 365 EDSDTYLHRVARA 377
Score = 55.5 bits (132), Expect = 2e-07
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQ MMFSATLSK+IRP+C+KFMQD
Sbjct: 217 TPHEKQCMMFSATLSKDIRPVCRKFMQD 244
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 226 bits (577), Expect = 5e-59
Identities = 105/133 (78%), Positives = 126/133 (94%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQ 304
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 365 EDSDTYLHRVARA 377
Score = 56.6 bits (135), Expect = 8e-08
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQ MMFSATLSKEIRP+C+KFMQD
Sbjct: 217 TPHEKQCMMFSATLSKEIRPVCRKFMQD 244
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 226 bits (577), Expect = 5e-59
Identities = 105/133 (78%), Positives = 126/133 (94%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQ 304
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 790 EDSDTYLHRVARA 828
EDSDTYLHRVARA
Sbjct: 365 EDSDTYLHRVARA 377
Score = 56.6 bits (135), Expect = 8e-08
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TPH+KQ MMFSATLSKEIRP+C+KFMQD
Sbjct: 217 TPHEKQCMMFSATLSKEIRPVCRKFMQD 244
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 219 bits (559), Expect = 6e-57
Identities = 102/133 (76%), Positives = 124/133 (93%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
P+E+++DD++KLTLHGL+QHY+K+KE EKNR+L LLD L+FNQV++FVK+V+RC AL
Sbjct: 242 PMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQ 301
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGMDIERVNIVFNYDMP
Sbjct: 302 LLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMP 361
Query: 790 EDSDTYLHRVARA 828
EDSD+YLHRVARA
Sbjct: 362 EDSDSYLHRVARA 374
Score = 50.8 bits (120), Expect = 4e-06
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TP QKQVMMFSATL KE+R +CK+FMQD
Sbjct: 214 TPQQKQVMMFSATLPKELRTVCKRFMQD 241
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 183 bits (464), Expect = 6e-46
Identities = 86/133 (64%), Positives = 110/133 (82%)
Frame = +1
Query: 430 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 609
PLEI++DD++KLTLHGL+QHY+K++E KNRK+ +LLD L+FNQV++FVKSV R L
Sbjct: 254 PLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDR 313
Query: 610 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 789
LL E NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+DIERVNIV NYDMP
Sbjct: 314 LLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMP 373
Query: 790 EDSDTYLHRVARA 828
+ D+YLHRV RA
Sbjct: 374 DSPDSYLHRVGRA 386
Score = 53.5 bits (127), Expect = 7e-07
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 2 TPHQKQVMMFSATLSKEIRPICKKFMQD 85
TP QKQVMMFSATLS EIRPICKKFMQ+
Sbjct: 226 TPPQKQVMMFSATLSNEIRPICKKFMQN 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,741,654
Number of Sequences: 369166
Number of extensions: 1711914
Number of successful extensions: 4192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4152
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)