Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B24
(271 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall prot... 28 5.1
sp|Q8FVU9|GCSP_BRUSU Glycine dehydrogenase [decarboxylating... 28 6.6
sp|P62921|GCSP_BRUME Glycine dehydrogenase [decarboxylating... 28 6.6
sp|P62920|GCSP_BRUAB Glycine dehydrogenase [decarboxylating... 28 6.6
sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane ... 28 6.6
sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall prote... 28 6.6
sp|Q6D3U2|LFTR_ERWCT Leucyl/phenylalanyl-tRNA--protein tran... 28 6.6
sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane ... 28 8.7
sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein tran... 28 8.7
>sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall protein 1 precursor
Length = 206
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 262 PPKTRKPVSHNTS*FGMVSSLPAYGKNPVLCPVFAFPIVKSPPVLQRTMYKP 107
PP + PV V P Y K PV+ P P V PPV++ +YKP
Sbjct: 117 PPVVKPPVYKPPVYKPPVEKPPVY-KPPVVKPPVYKPPVYKPPVVKPPVYKP 167
>sp|Q8FVU9|GCSP_BRUSU Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
(Glycine cleavage system P-protein)
Length = 932
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 27 GERTRGFFIMITRRYGRVPYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGRE 206
G+ R ++ + +G P +A A + +V CR GD+ I K A
Sbjct: 568 GQGHRNICLIPSSAHGTNPASASMAGMSVVVVNCRPDGDIDIDDLKAKAEKHRDNLAAFM 627
Query: 207 DTIPNYEVLWDTGLRVF 257
T P+ +++ G++ F
Sbjct: 628 ITYPSTYGVFEEGIKAF 644
>sp|P62921|GCSP_BRUME Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
(Glycine cleavage system P-protein)
Length = 932
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 27 GERTRGFFIMITRRYGRVPYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGRE 206
G+ R ++ + +G P +A A + +V CR GD+ I K A
Sbjct: 568 GQGHRNICLIPSSAHGTNPASASMAGMSVVVVNCRPDGDIDIDDLKAKAEKHRDNLAAFM 627
Query: 207 DTIPNYEVLWDTGLRVF 257
T P+ +++ G++ F
Sbjct: 628 ITYPSTYGVFEEGIKAF 644
>sp|P62920|GCSP_BRUAB Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
(Glycine cleavage system P-protein)
Length = 932
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 27 GERTRGFFIMITRRYGRVPYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGRE 206
G+ R ++ + +G P +A A + +V CR GD+ I K A
Sbjct: 568 GQGHRNICLIPSSAHGTNPASASMAGMSVVVVNCRPDGDIDIDDLKAKAEKHRDNLAAFM 627
Query: 207 DTIPNYEVLWDTGLRVF 257
T P+ +++ G++ F
Sbjct: 628 ITYPSTYGVFEEGIKAF 644
>sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane receptor ROR1 precursor
(Neurotrophic tyrosine kinase, receptor-related 1)
(mROR1)
Length = 937
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 268 CSPPKTRKPVS-HNTS*FGMVSSLPAYGKN 182
C PPK+R P S ++ G V+SLP+ G N
Sbjct: 848 CPPPKSRSPSSARGSTSTGHVASLPSSGSN 877
>sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall protein precursor (MSPRP)
Length = 236
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -1
Query: 262 PPKTRKPVSHNTS*FGMVSSLPAYGKNPVLCPVFAFPIVKSPPVLQRTMYKP 107
PP + PV V P Y K PV P P V PPV++ +YKP
Sbjct: 32 PPVYKPPVEKPPVYKPPVEKPPVY-KPPVYKPPVEKPPVYKPPVVKPPVYKP 82
>sp|Q6D3U2|LFTR_ERWCT Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase)
(Leucyltransferase) (Phenyalanyltransferase)
Length = 234
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 81 PYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGREDTIPNYEVLW 236
P +A+ GL V GGDL++ + K + G FP+ P +LW
Sbjct: 16 PNHALDNPNGLLAV----GGDLSVARLKVAYRQGIFPWFS-----PGEPILW 58
>sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane receptor ROR1 precursor
(Neurotrophic tyrosine kinase, receptor-related 1)
Length = 937
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 268 CSPPKTRKPVS-HNTS*FGMVSSLPAYGKN 182
C PPK+R P S ++ G V+SLP+ G N
Sbjct: 848 CPPPKSRSPSSASGSTSTGHVTSLPSSGSN 877
>sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase)
(Leucyltransferase) (Phenyalanyltransferase)
Length = 243
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 81 PYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGREDTI 215
P+ A+ GL GGDL + + + G FP+ G ED I
Sbjct: 18 PFTALDDPNGLLAF----GGDLRLERIWAAYQQGIFPWYGPEDPI 58
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,750,611
Number of Sequences: 369166
Number of extensions: 757020
Number of successful extensions: 1838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)