Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B21
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 31 0.78
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 30 2.3
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 29 3.9
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 31.2 bits (69), Expect = 0.78
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 5 LSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTEEHVKEKDCNGS 184
LSDL DI DSE K + + + + SE+ EE +E++ GS
Sbjct: 263 LSDLQDISDSERKTSSAESSSAES----------------GSGSEEEEEEEEEEEEEEGS 306
Query: 185 SAKVTENGDSAENE 226
+++ +E + E E
Sbjct: 307 TSEESEEEEEEEEE 320
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 29.6 bits (65), Expect = 2.3
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +2
Query: 5 LSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTEEHV 160
LSDL DI DSE K A++G +EE++ SE+ EE
Sbjct: 264 LSDLQDISDSERKTSSAESSSAESGSGSEEEE-------EEEEEEEEEGSTSEESEEEEE 316
Query: 161 KEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 313
+E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 317 EEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 360
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 28.9 bits (63), Expect = 3.9
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +2
Query: 5 LSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTEEHV 160
LSDL DI DSE K A++G +EE++ SE+ EE
Sbjct: 276 LSDLQDISDSERKTSSAESSSAESGSGSEEEE----EEEEEEEEEGSTSEESEEEEEEEE 331
Query: 161 KEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 313
+E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 332 EEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,856,133
Number of Sequences: 369166
Number of extensions: 419888
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)