Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B18
(682 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 233 5e-61
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 233 5e-61
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 232 6e-61
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 231 1e-60
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 231 1e-60
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 231 1e-60
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 231 1e-60
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 231 1e-60
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 231 2e-60
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 230 2e-60
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 233 bits (593), Expect = 5e-61
Identities = 107/173 (61%), Positives = 139/173 (80%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + S
Sbjct: 325 QVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 385 DLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 233 bits (593), Expect = 5e-61
Identities = 107/173 (61%), Positives = 139/173 (80%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + S
Sbjct: 325 QVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DL+ P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 385 DLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 232 bits (592), Expect = 6e-61
Identities = 110/173 (63%), Positives = 134/173 (77%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP YV D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 231 bits (590), Expect = 1e-60
Identities = 109/173 (63%), Positives = 133/173 (76%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 231 bits (590), Expect = 1e-60
Identities = 109/173 (63%), Positives = 133/173 (76%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 231 bits (589), Expect = 1e-60
Identities = 109/173 (63%), Positives = 133/173 (76%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 385 DLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 231 bits (589), Expect = 1e-60
Identities = 108/173 (62%), Positives = 134/173 (77%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 231 bits (589), Expect = 1e-60
Identities = 108/173 (62%), Positives = 134/173 (77%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 231 bits (588), Expect = 2e-60
Identities = 108/173 (62%), Positives = 138/173 (79%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
VIGV++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + S
Sbjct: 325 QVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DL P D G ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 385 DLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 230 bits (587), Expect = 2e-60
Identities = 108/173 (62%), Positives = 133/173 (76%)
Frame = +1
Query: 1 VIGVQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQN 180
V+GV++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQN
Sbjct: 265 VVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQN 324
Query: 181 QVNRNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTES 360
QVNR DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F S
Sbjct: 325 QVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAIS 384
Query: 361 DLYEPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 519
DLYEPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G FDF ++ K
Sbjct: 385 DLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGMAFDFENMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,979,375
Number of Sequences: 369166
Number of extensions: 1672210
Number of successful extensions: 4684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4683
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)